Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PY719_RS00480 Genome accession   NZ_CP119003
Coordinates   104913..105449 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain CE0026a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 99913..110449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY719_RS00460 (PY719_00460) soxR 101641..102105 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PY719_RS00465 (PY719_00465) soxS 102191..102514 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PY719_RS00470 (PY719_00470) pdeC 102517..104103 (-) 1587 WP_287167082.1 c-di-GMP phosphodiesterase PdeC -
  PY719_RS00475 (PY719_00475) yjcB 104533..104814 (+) 282 WP_001295689.1 YjcB family protein -
  PY719_RS00480 (PY719_00480) ssb 104913..105449 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PY719_RS00485 (PY719_00485) uvrA 105703..108525 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PY719_RS00490 (PY719_00490) yjbR 108560..108916 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PY719_RS00495 (PY719_00495) yjbQ 108920..109336 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PY719_RS00500 (PY719_00500) aphA 109447..110160 (-) 714 WP_001384961.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=724439 PY719_RS00480 WP_000168305.1 104913..105449(-) (ssb) [Escherichia coli strain CE0026a]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=724439 PY719_RS00480 WP_000168305.1 104913..105449(-) (ssb) [Escherichia coli strain CE0026a]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489