Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU43P_RS24375 Genome accession   NZ_AP019365
Coordinates   5320093..5320641 (-) Length   182 a.a.
NCBI ID   WP_317660053.1    Uniprot ID   A0A5K7U240
Organism   Pseudomonas sp. KU43P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5315093..5325641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU43P_RS24350 (KU43P_47960) - 5315124..5315534 (+) 411 WP_317660048.1 GlcG/HbpS family heme-binding protein -
  KU43P_RS24355 (KU43P_47970) - 5315547..5316314 (-) 768 WP_317660049.1 SDR family NAD(P)-dependent oxidoreductase -
  KU43P_RS24360 (KU43P_47980) - 5316339..5317124 (-) 786 WP_317660050.1 sulfite exporter TauE/SafE family protein -
  KU43P_RS24365 (KU43P_47990) - 5317154..5318179 (-) 1026 WP_317660051.1 TauD/TfdA family dioxygenase -
  KU43P_RS24370 (KU43P_48000) - 5318600..5319997 (+) 1398 WP_317660052.1 PLP-dependent aminotransferase family protein -
  KU43P_RS24375 (KU43P_48010) ssb 5320093..5320641 (-) 549 WP_317660053.1 single-stranded DNA-binding protein Machinery gene
  KU43P_RS24380 (KU43P_48020) - 5320651..5322045 (-) 1395 WP_317660054.1 MFS transporter -
  KU43P_RS24385 (KU43P_48030) uvrA 5322175..5325009 (+) 2835 WP_317660055.1 excinuclease ABC subunit UvrA -
  KU43P_RS24390 (KU43P_48040) bfr 5325079..5325543 (-) 465 WP_016393397.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20377.45 Da        Isoelectric Point: 5.9312

>NTDB_id=72438 KU43P_RS24375 WP_317660053.1 5320093..5320641(-) (ssb) [Pseudomonas sp. KU43P]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGDQYNQGGGNNYNQGGQQQQYNQAPQRQQAPRPQQAQQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=72438 KU43P_RS24375 WP_317660053.1 5320093..5320641(-) (ssb) [Pseudomonas sp. KU43P]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTGTATATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGAACCAGCAAGGCGGCGACCAGTACAACCAGGGTGGTGGCAACAATTACAACC
AGGGTGGCCAGCAGCAACAGTACAATCAGGCTCCTCAGCGTCAGCAGGCTCCGCGCCCGCAACAGGCTCAGCAGCGCCCG
GCGCCGCAGCAGCCAGCGCCACAGCCGGCGGCGGACTTCGACAGCTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K7U240

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.435

100

0.56
  ssb Glaesserella parasuis strain SC1401

50.526

100

0.527
  ssb Neisseria gonorrhoeae MS11

48.649

100

0.495
  ssb Neisseria meningitidis MC58

47.486

98.352

0.467

Multiple sequence alignment