Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5R19_RS01780 Genome accession   NZ_CP103722
Coordinates   371929..372459 (+) Length   176 a.a.
NCBI ID   WP_087876593.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 3131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 366929..377459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5R19_RS01760 (M5R19_01760) aphA 367253..367966 (+) 714 WP_017382626.1 acid phosphatase AphA -
  M5R19_RS01765 (M5R19_01765) - 368079..368495 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5R19_RS01770 (M5R19_01770) - 368498..368851 (+) 354 WP_032620552.1 MmcQ/YjbR family DNA-binding protein -
  M5R19_RS01775 (M5R19_01775) uvrA 368855..371677 (-) 2823 WP_015570187.1 excinuclease ABC subunit UvrA -
  M5R19_RS01780 (M5R19_01780) ssb 371929..372459 (+) 531 WP_087876593.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M5R19_RS01785 (M5R19_01785) - 372521..372802 (-) 282 WP_003860282.1 YjcB family protein -
  M5R19_RS01790 (M5R19_01790) - 373246..374646 (+) 1401 WP_032620549.1 sensor domain-containing diguanylate cyclase -
  M5R19_RS01795 (M5R19_01795) - 374912..376477 (+) 1566 WP_039272016.1 EAL domain-containing protein -
  M5R19_RS01800 (M5R19_01800) soxS 376484..376810 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  M5R19_RS01805 (M5R19_01805) soxR 376909..377367 (+) 459 WP_045331962.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18877.92 Da        Isoelectric Point: 5.2456

>NTDB_id=724326 M5R19_RS01780 WP_087876593.1 371929..372459(+) (ssb) [Enterobacter hormaechei strain 3131]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGVGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=724326 M5R19_RS01780 WP_087876593.1 371929..372459(+) (ssb) [Enterobacter hormaechei strain 3131]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGTTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466