Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PY717_RS18790 Genome accession   NZ_CP118997
Coordinates   3879803..3880339 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain CE0032f     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3874803..3885339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY717_RS18770 (PY717_18770) soxR 3876531..3876995 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PY717_RS18775 (PY717_18775) soxS 3877081..3877404 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PY717_RS18780 (PY717_18780) pdeC 3877407..3878993 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  PY717_RS18785 (PY717_18785) yjcB 3879423..3879704 (+) 282 WP_001295689.1 YjcB family protein -
  PY717_RS18790 (PY717_18790) ssb 3879803..3880339 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PY717_RS18795 (PY717_18795) uvrA 3880593..3883415 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PY717_RS18800 (PY717_18800) yjbR 3883450..3883806 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PY717_RS18805 (PY717_18805) yjbQ 3883810..3884226 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PY717_RS18810 (PY717_18810) aphA 3884337..3885050 (-) 714 WP_094250100.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=724323 PY717_RS18790 WP_000168305.1 3879803..3880339(-) (ssb) [Escherichia coli strain CE0032f]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=724323 PY717_RS18790 WP_000168305.1 3879803..3880339(-) (ssb) [Escherichia coli strain CE0032f]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489