Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5S90_RS23065 Genome accession   NZ_CP103633
Coordinates   4779863..4780399 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 2900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4774863..4785399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S90_RS23035 (M5S90_23035) soxR 4775814..4776278 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  M5S90_RS23040 (M5S90_23040) soxS 4776364..4776687 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  M5S90_RS23045 (M5S90_23045) pdeC 4776690..4777646 (-) 957 Protein_4542 c-di-GMP phosphodiesterase PdeC -
  M5S90_RS23050 (M5S90_23050) - 4777690..4778387 (+) 698 WP_151884388.1 IS1 family transposase -
  M5S90_RS23055 (M5S90_23055) pdeC 4778403..4779053 (-) 651 Protein_4544 c-di-GMP phosphodiesterase PdeC -
  M5S90_RS23060 (M5S90_23060) yjcB 4779483..4779764 (+) 282 WP_001295689.1 YjcB family protein -
  M5S90_RS23065 (M5S90_23065) ssb 4779863..4780399 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M5S90_RS23070 (M5S90_23070) uvrA 4780654..4783476 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  M5S90_RS23075 (M5S90_23075) yjbR 4783511..4783867 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  M5S90_RS23080 (M5S90_23080) yjbQ 4783871..4784287 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5S90_RS23085 (M5S90_23085) aphA 4784398..4785111 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=723820 M5S90_RS23065 WP_000168305.1 4779863..4780399(-) (ssb) [Escherichia coli strain 2900]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=723820 M5S90_RS23065 WP_000168305.1 4779863..4780399(-) (ssb) [Escherichia coli strain 2900]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489