Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   PWP91_RS02920 Genome accession   NZ_CP118738
Coordinates   574622..576064 (-) Length   480 a.a.
NCBI ID   WP_274998800.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 569622..581064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS02895 (PWP91_02895) nox 569653..570993 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  PWP91_RS02900 (PWP91_02900) ssbB 571083..571472 (+) 390 WP_010905314.1 single-stranded DNA-binding protein Machinery gene
  PWP91_RS02905 (PWP91_02905) groES 571592..571876 (+) 285 WP_003131589.1 co-chaperone GroES -
  PWP91_RS02910 (PWP91_02910) groL 571964..573592 (+) 1629 WP_003131585.1 chaperonin GroEL -
  PWP91_RS02915 (PWP91_02915) vicX 573639..574451 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  PWP91_RS02920 (PWP91_02920) vicK 574622..576064 (-) 1443 WP_274998800.1 sensor histidine kinase Regulator
  PWP91_RS02925 (PWP91_02925) yycF 576057..576758 (-) 702 WP_003131580.1 response regulator YycF -
  PWP91_RS02930 (PWP91_02930) tmk 576936..577571 (+) 636 WP_274998801.1 dTMP kinase -
  PWP91_RS02935 (PWP91_02935) - 577704..578564 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  PWP91_RS02940 (PWP91_02940) yaaT 578616..579398 (+) 783 WP_010905316.1 PSP1 domain-containing protein Regulator
  PWP91_RS02945 (PWP91_02945) yabA 579391..579717 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  PWP91_RS02950 (PWP91_02950) rsmI 579717..580592 (+) 876 WP_058203377.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PWP91_RS02955 (PWP91_02955) - 580669..580860 (-) 192 WP_003131566.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54679.14 Da        Isoelectric Point: 4.5889

>NTDB_id=723532 PWP91_RS02920 WP_274998800.1 574622..576064(-) (vicK) [Lactococcus lactis strain P-1]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKITDQYNFYDLLEKEPEITIETHDAGNESISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=723532 PWP91_RS02920 WP_274998800.1 574622..576064(-) (vicK) [Lactococcus lactis strain P-1]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGTGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATATGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACGCAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATTCTCGCATATATGGTTGATGGCGTCATTGCCACCGATCGTCGTGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCACTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTTTTAAAAATTACTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACATGATGC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTGCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TCTTACATGATATGACTGAACAAGACAAGGCCGAACGAGAGCGCCGTCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGATGTTCTAATCTCCATCAGTGACCAAGGAATGGGAATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGGGGGACAGGTTTAGGCCTCTC
CATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGCTCCGAAGGAGAAGGAAAAGGAACGACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGTACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

PAS domain (PAS_9)

(124-220)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.559

86.875

0.448
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442