Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NX050_RS09240 Genome accession   NZ_CP103456
Coordinates   1745212..1745508 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1740212..1750508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS09215 (NX050_09215) yqhB 1740270..1741598 (-) 1329 WP_014480261.1 hemolysin family protein -
  NX050_RS09220 (NX050_09220) corA 1741740..1742693 (+) 954 WP_014480260.1 magnesium transporter CorA -
  NX050_RS09225 (NX050_09225) - 1742695..1742892 (+) 198 WP_014480259.1 CBS domain-containing protein -
  NX050_RS09230 (NX050_09230) comGA 1743104..1744174 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NX050_RS09235 (NX050_09235) comGB 1744161..1745198 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  NX050_RS09240 (NX050_09240) comGC 1745212..1745508 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NX050_RS09245 (NX050_09245) comGD 1745498..1745929 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NX050_RS09250 (NX050_09250) comGE 1745913..1746260 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NX050_RS09255 (NX050_09255) comGF 1746286..1746669 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  NX050_RS09260 (NX050_09260) comGG 1746670..1747044 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NX050_RS09265 (NX050_09265) spoIITA 1747115..1747294 (+) 180 WP_014480252.1 YqzE family protein -
  NX050_RS09270 (NX050_09270) yqzG 1747336..1747662 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  NX050_RS09275 (NX050_09275) tapA 1747934..1748695 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NX050_RS09280 (NX050_09280) sipW 1748679..1749251 (+) 573 WP_003230181.1 signal peptidase I SipW -
  NX050_RS09285 (NX050_09285) tasA 1749315..1750100 (+) 786 WP_014480250.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=722877 NX050_RS09240 WP_003230162.1 1745212..1745508(+) (comGC) [Bacillus subtilis strain PN176 (HK176)]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=722877 NX050_RS09240 WP_003230162.1 1745212..1745508(+) (comGC) [Bacillus subtilis strain PN176 (HK176)]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378