Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NX856_RS21315 Genome accession   NZ_CP103412
Coordinates   4197575..4198093 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain HF-14109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192575..4203093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX856_RS21285 (NX856_21285) - 4193774..4194154 (-) 381 WP_015418645.1 VOC family protein -
  NX856_RS21290 (NX856_21290) - 4194206..4195150 (-) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  NX856_RS21295 (NX856_21295) xth 4195213..4195971 (-) 759 WP_167340973.1 exodeoxyribonuclease III -
  NX856_RS21300 (NX856_21300) - 4195968..4196525 (-) 558 WP_032870836.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NX856_RS21305 (NX856_21305) - 4196522..4197103 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  NX856_RS21310 (NX856_21310) rpsR 4197292..4197531 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  NX856_RS21315 (NX856_21315) ssbA 4197575..4198093 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  NX856_RS21320 (NX856_21320) rpsF 4198133..4198420 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  NX856_RS21325 (NX856_21325) ychF 4198532..4199632 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  NX856_RS21330 (NX856_21330) - 4199758..4201761 (-) 2004 WP_167340974.1 molybdopterin-dependent oxidoreductase -
  NX856_RS21335 (NX856_21335) - 4201808..4202014 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=722697 NX856_RS21315 WP_004392979.1 4197575..4198093(-) (ssbA) [Bacillus velezensis strain HF-14109]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=722697 NX856_RS21315 WP_004392979.1 4197575..4198093(-) (ssbA) [Bacillus velezensis strain HF-14109]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378