Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NX823_RS21855 | Genome accession | NZ_CP103352 |
| Coordinates | 4108021..4108539 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain SRCM117508 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4062567..4108006 | 4108021..4108539 | flank | 15 |
Gene organization within MGE regions
Location: 4062567..4108539
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NX823_RS21570 (NX823_21570) | yybO | 4062983..4064283 (+) | 1301 | Protein_4193 | MFS transporter | - |
| NX823_RS21575 (NX823_21575) | - | 4064444..4065180 (+) | 737 | Protein_4194 | MerR family transcriptional regulator | - |
| NX823_RS21580 (NX823_21580) | - | 4065218..4066006 (-) | 789 | WP_129134125.1 | hypothetical protein | - |
| NX823_RS21585 (NX823_21585) | yybH | 4066074..4066463 (-) | 390 | WP_014481490.1 | nuclear transport factor 2 family protein | - |
| NX823_RS21590 (NX823_21590) | yybG | 4066609..4067448 (+) | 840 | WP_129134126.1 | pentapeptide repeat-containing protein | - |
| NX823_RS21595 (NX823_21595) | - | 4067484..4068113 (-) | 630 | Protein_4198 | MFS transporter | - |
| NX823_RS21600 (NX823_21600) | - | 4068116..4068558 (-) | 443 | Protein_4199 | MBL fold metallo-hydrolase | - |
| NX823_RS21605 (NX823_21605) | yybA | 4068688..4069140 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| NX823_RS21610 (NX823_21610) | yyaT | 4069260..4069706 (+) | 447 | WP_258994503.1 | GNAT family N-acetyltransferase | - |
| NX823_RS21615 (NX823_21615) | yyaS | 4069703..4070305 (+) | 603 | WP_017695807.1 | YitT family protein | - |
| NX823_RS21620 (NX823_21620) | satA | 4070373..4070894 (-) | 522 | WP_258994504.1 | streptothricin N-acetyltransferase SatA | - |
| NX823_RS21625 (NX823_21625) | yyaQ | 4071303..4071659 (+) | 357 | WP_258994506.1 | MmcQ/YjbR family DNA-binding protein | - |
| NX823_RS21630 (NX823_21630) | yyaP | 4071819..4072385 (+) | 567 | WP_258994507.1 | dihydrofolate reductase family protein | - |
| NX823_RS21635 (NX823_21635) | - | 4072655..4072814 (+) | 160 | Protein_4206 | DUF255 domain-containing protein | - |
| NX823_RS21640 (NX823_21640) | tet(L) | 4072920..4074296 (-) | 1377 | WP_258994511.1 | tetracycline efflux MFS transporter Tet(L) | - |
| NX823_RS22145 | - | 4074330..4074512 (-) | 183 | WP_142387178.1 | tetracycline resistance efflux system leader peptide | - |
| NX823_RS21645 (NX823_21645) | - | 4074646..4074825 (+) | 180 | Protein_4209 | DUF255 domain-containing protein | - |
| NX823_RS21650 (NX823_21650) | - | 4074902..4076413 (+) | 1512 | WP_160216258.1 | recombinase family protein | - |
| NX823_RS21655 (NX823_21655) | - | 4076447..4077694 (-) | 1248 | WP_031600262.1 | IS256-like element ISBsu2 family transposase | - |
| NX823_RS21660 (NX823_21660) | - | 4077823..4078191 (-) | 369 | WP_144486887.1 | hypothetical protein | - |
| NX823_RS21665 (NX823_21665) | - | 4078421..4078801 (-) | 381 | WP_160216296.1 | DUF4467 domain-containing protein | - |
| NX823_RS21670 (NX823_21670) | - | 4078864..4079370 (-) | 507 | WP_160216259.1 | hypothetical protein | - |
| NX823_RS21675 (NX823_21675) | - | 4079385..4080374 (-) | 990 | WP_160216260.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| NX823_RS21680 (NX823_21680) | conG | 4080371..4082818 (-) | 2448 | WP_160216261.1 | transposon conjugation system subunit ConG | - |
| NX823_RS21685 (NX823_21685) | - | 4082822..4083148 (-) | 327 | WP_031600315.1 | YddF family protein | - |
| NX823_RS21690 (NX823_21690) | conE | 4083166..4085661 (-) | 2496 | WP_160216262.1 | VirB4-like ATPase ConE | - |
| NX823_RS21695 (NX823_21695) | conD | 4085549..4086073 (-) | 525 | WP_088272256.1 | conjugal transfer protein | - |
| NX823_RS21700 (NX823_21700) | conC | 4086086..4086334 (-) | 249 | WP_088272255.1 | transposon conjugation system subunit ConC | - |
| NX823_RS21705 (NX823_21705) | conB | 4086346..4087410 (-) | 1065 | WP_088272254.1 | conjugal transfer protein | - |
| NX823_RS21710 (NX823_21710) | - | 4087438..4087587 (-) | 150 | WP_003328171.1 | hypothetical protein | - |
| NX823_RS21715 (NX823_21715) | - | 4087605..4087883 (-) | 279 | WP_160216263.1 | hypothetical protein | - |
| NX823_RS21720 (NX823_21720) | - | 4088024..4088260 (+) | 237 | WP_084992069.1 | hypothetical protein | - |
| NX823_RS21725 (NX823_21725) | - | 4088364..4088630 (-) | 267 | WP_160216264.1 | hypothetical protein | - |
| NX823_RS21730 (NX823_21730) | - | 4088725..4089282 (+) | 558 | WP_160216265.1 | hypothetical protein | - |
| NX823_RS21735 (NX823_21735) | - | 4089269..4089541 (-) | 273 | WP_160216266.1 | hypothetical protein | - |
| NX823_RS21740 (NX823_21740) | nikK | 4089810..4090868 (-) | 1059 | WP_160216267.1 | replication initiation factor domain-containing protein | - |
| NX823_RS21745 (NX823_21745) | conQ | 4090861..4092303 (-) | 1443 | WP_160216268.1 | coupling conjugation protein ConQ | - |
| NX823_RS21750 (NX823_21750) | helP | 4092339..4092719 (-) | 381 | WP_009966619.1 | helicase processivity factor HelP | - |
| NX823_RS21755 (NX823_21755) | - | 4092755..4092883 (-) | 129 | WP_119122843.1 | hypothetical protein | - |
| NX823_RS21760 (NX823_21760) | - | 4093089..4093349 (-) | 261 | WP_160216269.1 | hypothetical protein | - |
| NX823_RS21765 (NX823_21765) | - | 4093403..4093627 (-) | 225 | WP_370957469.1 | hypothetical protein | - |
| NX823_RS21770 (NX823_21770) | - | 4093660..4093839 (-) | 180 | WP_019716390.1 | hypothetical protein | - |
| NX823_RS21775 (NX823_21775) | - | 4094135..4094518 (+) | 384 | WP_129093547.1 | helix-turn-helix domain-containing protein | - |
| NX823_RS21780 (NX823_21780) | - | 4094515..4095045 (+) | 531 | WP_019716392.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NX823_RS21785 (NX823_21785) | - | 4095158..4096354 (-) | 1197 | WP_258994544.1 | tetratricopeptide repeat protein | - |
| NX823_RS21790 (NX823_21790) | - | 4096582..4097301 (-) | 720 | WP_129093549.1 | hypothetical protein | - |
| NX823_RS21795 (NX823_21795) | - | 4097577..4097773 (+) | 197 | Protein_4239 | DUF255 domain-containing protein | - |
| NX823_RS21800 (NX823_21800) | - | 4097962..4098687 (+) | 726 | WP_041351256.1 | PmeII family type II restriction endonuclease | - |
| NX823_RS21805 (NX823_21805) | dcm | 4098751..4100091 (-) | 1341 | WP_231592845.1 | DNA (cytosine-5-)-methyltransferase | - |
| NX823_RS21810 (NX823_21810) | - | 4100311..4100472 (+) | 162 | WP_080316903.1 | DUF255 domain-containing protein | - |
| NX823_RS21815 (NX823_21815) | yyaL | 4100511..4102400 (+) | 1890 | WP_258994551.1 | thioredoxin domain-containing protein | - |
| NX823_RS21820 (NX823_21820) | yyaK | 4102397..4103296 (-) | 900 | WP_015250787.1 | CPBP family intramembrane glutamic endopeptidase | - |
| NX823_RS21825 (NX823_21825) | yyaJ | 4103523..4104878 (+) | 1356 | WP_122895823.1 | MFS transporter | - |
| NX823_RS21830 (NX823_21830) | maa | 4104912..4105466 (-) | 555 | WP_033884396.1 | sugar O-acetyltransferase | - |
| NX823_RS21835 (NX823_21835) | yyaH | 4105484..4105864 (-) | 381 | WP_003244460.1 | VOC family protein | - |
| NX823_RS21840 (NX823_21840) | ccpB | 4105920..4106855 (-) | 936 | WP_258994559.1 | transcriptional regulator CcpB | - |
| NX823_RS21845 (NX823_21845) | xth | 4106915..4107673 (-) | 759 | WP_003243194.1 | exodeoxyribonuclease III | - |
| NX823_RS21850 (NX823_21850) | rpsR | 4107738..4107977 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| NX823_RS21855 (NX823_21855) | ssbA | 4108021..4108539 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=722336 NX823_RS21855 WP_003219228.1 4108021..4108539(-) (ssbA) [Bacillus subtilis strain SRCM117508]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=722336 NX823_RS21855 WP_003219228.1 4108021..4108539(-) (ssbA) [Bacillus subtilis strain SRCM117508]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |