Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NX810_RS22135 Genome accession   NZ_CP103350
Coordinates   4226887..4227405 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM117108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4221887..4232405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS22105 (NX810_22105) yyaJ 4222390..4223745 (+) 1356 WP_029318525.1 MFS transporter -
  NX810_RS22110 (NX810_22110) maa 4223779..4224333 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  NX810_RS22115 (NX810_22115) yyaH 4224351..4224731 (-) 381 WP_120363565.1 VOC family protein -
  NX810_RS22120 (NX810_22120) ccpB 4224787..4225722 (-) 936 WP_029318523.1 transcriptional regulator CcpB -
  NX810_RS22125 (NX810_22125) xth 4225781..4226539 (-) 759 WP_069703958.1 exodeoxyribonuclease III -
  NX810_RS22130 (NX810_22130) rpsR 4226604..4226843 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NX810_RS22135 (NX810_22135) ssbA 4226887..4227405 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NX810_RS22140 (NX810_22140) rpsF 4227446..4227733 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NX810_RS22145 (NX810_22145) ychF 4227844..4228944 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NX810_RS22150 (NX810_22150) yyaE 4229071..4231074 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  NX810_RS22155 (NX810_22155) yyzM 4231125..4231331 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=722177 NX810_RS22135 WP_003219228.1 4226887..4227405(-) (ssbA) [Bacillus subtilis strain SRCM117108]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=722177 NX810_RS22135 WP_003219228.1 4226887..4227405(-) (ssbA) [Bacillus subtilis strain SRCM117108]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378