Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PVK50_RS04425 Genome accession   NZ_CP118311
Coordinates   859416..860378 (+) Length   320 a.a.
NCBI ID   WP_002989200.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20164915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854416..865378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK50_RS04400 (PVK50_04360) - 854421..855011 (+) 591 WP_002989185.1 serine hydrolase -
  PVK50_RS04405 (PVK50_04365) - 855125..856345 (-) 1221 WP_002989189.1 DUF3114 domain-containing protein -
  PVK50_RS04410 (PVK50_04370) queA 856352..857380 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PVK50_RS04415 (PVK50_04375) nagB 857582..858286 (+) 705 WP_002989194.1 glucosamine-6-phosphate deaminase -
  PVK50_RS04420 (PVK50_04380) - 858405..859121 (+) 717 WP_002989197.1 pseudouridine synthase -
  PVK50_RS04425 (PVK50_04385) coiA 859416..860378 (+) 963 WP_002989200.1 competence protein CoiA Machinery gene
  PVK50_RS04430 (PVK50_04390) pepF 860391..862196 (+) 1806 WP_002989205.1 oligoendopeptidase F Regulator
  PVK50_RS04435 (PVK50_04395) - 862572..863768 (+) 1197 WP_002989208.1 OFA family MFS transporter -
  PVK50_RS04440 (PVK50_04400) - 863834..864541 (+) 708 WP_002989211.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37749.14 Da        Isoelectric Point: 10.1206

>NTDB_id=722116 PVK50_RS04425 WP_002989200.1 859416..860378(+) (coiA) [Streptococcus pyogenes strain 20164915]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIEGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=722116 PVK50_RS04425 WP_002989200.1 859416..860378(+) (coiA) [Streptococcus pyogenes strain 20164915]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTGAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403