Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW321_RS05930 Genome accession   NZ_CP103345
Coordinates   1252809..1253327 (+) Length   172 a.a.
NCBI ID   WP_012092087.1    Uniprot ID   A6X111
Organism   Brucella anthropi strain CGMCC 1.17299     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1247809..1258327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW321_RS05925 (NW321_05925) uvrA 1248892..1251816 (-) 2925 WP_010660138.1 excinuclease ABC subunit UvrA -
  NW321_RS05930 (NW321_05930) ssb 1252809..1253327 (+) 519 WP_012092087.1 single-stranded DNA-binding protein Machinery gene
  NW321_RS05935 (NW321_05935) arsC 1253444..1253857 (-) 414 WP_012092086.1 arsenate reductase (glutaredoxin) -
  NW321_RS05940 (NW321_05940) phnF 1253925..1254698 (-) 774 WP_115179273.1 phosphonate metabolism transcriptional regulator PhnF -
  NW321_RS05945 (NW321_05945) phnG 1254913..1255440 (+) 528 WP_012092084.1 phosphonate C-P lyase system protein PhnG -
  NW321_RS05950 (NW321_05950) phnH 1255440..1256069 (+) 630 WP_012092083.1 phosphonate C-P lyase system protein PhnH -
  NW321_RS05955 (NW321_05955) - 1256072..1257181 (+) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  NW321_RS05960 (NW321_05960) - 1257178..1258071 (+) 894 WP_012092082.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18577.30 Da        Isoelectric Point: 5.3476

>NTDB_id=722093 NW321_RS05930 WP_012092087.1 1252809..1253327(+) (ssb) [Brucella anthropi strain CGMCC 1.17299]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGGSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=722093 NW321_RS05930 WP_012092087.1 1252809..1253327(+) (ssb) [Brucella anthropi strain CGMCC 1.17299]
ATGGCTGGTAGCGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAATTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGATCGCCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAGAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGTGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAACTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGACTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCCGGCCCATCCAATCAGGGTGGCGGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6X111

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.133

100

0.494
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395