Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NT399_RS15895 Genome accession   NZ_CP103338
Coordinates   3322150..3322968 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317150..3327968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS15880 (NT399_15880) pilE 3317367..3317792 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  NT399_RS15885 (NT399_15885) pilY2 3317789..3318271 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NT399_RS15890 (NT399_15890) pilY1 3318284..3322138 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NT399_RS15895 (NT399_15895) pilX 3322150..3322968 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NT399_RS15900 (NT399_15900) pilW 3322965..3323966 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  NT399_RS15905 (NT399_15905) pilV 3323967..3324527 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NT399_RS15910 (NT399_15910) fimU 3324521..3324994 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NT399_RS15915 (NT399_15915) ispH 3325164..3326114 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NT399_RS15920 (NT399_15920) gmk 3326237..3326866 (+) 630 WP_000015937.1 guanylate kinase -
  NT399_RS15925 (NT399_15925) rpoZ 3326939..3327217 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NT399_RS15930 (NT399_15930) - 3327256..3327386 (+) 131 Protein_3097 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=722079 NT399_RS15895 WP_000149376.1 3322150..3322968(-) (pilX) [Acinetobacter baumannii strain AB105]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=722079 NT399_RS15895 WP_000149376.1 3322150..3322968(-) (pilX) [Acinetobacter baumannii strain AB105]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989