Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   NT399_RS15885 Genome accession   NZ_CP103338
Coordinates   3317789..3318271 (-) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain AB105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3312789..3323271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT399_RS15850 (NT399_15850) - 3312900..3313931 (+) 1032 WP_002125597.1 lipase secretion chaperone -
  NT399_RS15855 (NT399_15855) - 3314046..3314987 (+) 942 WP_085943440.1 triacylglycerol lipase -
  NT399_RS15860 (NT399_15860) rplS 3315039..3315407 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  NT399_RS15865 (NT399_15865) trmD 3315615..3316355 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NT399_RS15870 (NT399_15870) rimM 3316401..3316949 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  NT399_RS15875 (NT399_15875) rpsP 3316969..3317220 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  NT399_RS15880 (NT399_15880) pilE 3317367..3317792 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  NT399_RS15885 (NT399_15885) pilY2 3317789..3318271 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  NT399_RS15890 (NT399_15890) pilY1 3318284..3322138 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  NT399_RS15895 (NT399_15895) pilX 3322150..3322968 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=722077 NT399_RS15885 WP_001046423.1 3317789..3318271(-) (pilY2) [Acinetobacter baumannii strain AB105]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=722077 NT399_RS15885 WP_001046423.1 3317789..3318271(-) (pilY2) [Acinetobacter baumannii strain AB105]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419