Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NX062_RS20610 Genome accession   NZ_CP103328
Coordinates   3890949..3891467 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain KC14-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3885949..3896467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS20580 (NX062_20585) yyaJ 3886453..3887808 (+) 1356 WP_015250786.1 MFS transporter -
  NX062_RS20585 (NX062_20590) maa 3887842..3888396 (-) 555 WP_046161083.1 sugar O-acetyltransferase -
  NX062_RS20590 (NX062_20595) yyaH 3888414..3888794 (-) 381 WP_003244460.1 VOC family protein -
  NX062_RS20595 (NX062_20600) ccpB 3888850..3889785 (-) 936 WP_046161084.1 transcriptional regulator CcpB -
  NX062_RS20600 (NX062_20605) xth 3889844..3890602 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  NX062_RS20605 (NX062_20610) rpsR 3890666..3890905 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  NX062_RS20610 (NX062_20615) ssbA 3890949..3891467 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  NX062_RS20615 (NX062_20620) rpsF 3891508..3891795 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  NX062_RS20620 (NX062_20625) ychF 3891906..3893006 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  NX062_RS20625 (NX062_20630) yyaE 3893133..3895136 (-) 2004 WP_046161085.1 molybdopterin-dependent oxidoreductase -
  NX062_RS20630 (NX062_20635) yyzM 3895187..3895393 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=722019 NX062_RS20610 WP_003219228.1 3890949..3891467(-) (ssbA) [Bacillus subtilis strain KC14-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=722019 NX062_RS20610 WP_003219228.1 3890949..3891467(-) (ssbA) [Bacillus subtilis strain KC14-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378