Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NX761_RS00545 Genome accession   NZ_CP103306
Coordinates   126170..126634 (-) Length   154 a.a.
NCBI ID   WP_046848742.1    Uniprot ID   -
Organism   Nitrosomonas sp. PLL12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121170..131634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX761_RS00515 (NX761_00515) - 122253..123128 (-) 876 WP_046848739.1 cytochrome c -
  NX761_RS00520 (NX761_00520) - 123966..124232 (-) 267 WP_144412797.1 GIY-YIG nuclease family protein -
  NX761_RS00525 (NX761_00525) - 124741..125103 (-) 363 WP_052751972.1 hypothetical protein -
  NX761_RS00530 (NX761_00530) - 125122..125544 (-) 423 WP_200899676.1 hypothetical protein -
  NX761_RS00535 (NX761_00535) dgt 125481..125972 (-) 492 WP_200899763.1 dGTP triphosphohydrolase -
  NX761_RS00540 (NX761_00540) - 125885..126067 (-) 183 WP_200899677.1 hypothetical protein -
  NX761_RS00545 (NX761_00545) ssb 126170..126634 (-) 465 WP_046848742.1 single-stranded DNA-binding protein Machinery gene
  NX761_RS00550 (NX761_00550) - 126635..127993 (-) 1359 WP_046848743.1 MFS transporter -
  NX761_RS00555 (NX761_00555) uvrA 128087..130939 (+) 2853 WP_046848744.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17271.19 Da        Isoelectric Point: 5.0579

>NTDB_id=721832 NX761_RS00545 WP_046848742.1 126170..126634(-) (ssb) [Nitrosomonas sp. PLL12]
MASINKVILIGNLGRDPEVRYMPSGDAMANLNIATTDTWKDKGGEKQERTEWHRVVMFGKQAEIAGEYLKKGSQVYIEGR
LQTRKWTDKSNIERYTTEIVADRMQMLGGRATGASFESADREGEYNSSASYANKPANYNKTGSGFDDLEDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=721832 NX761_RS00545 WP_046848742.1 126170..126634(-) (ssb) [Nitrosomonas sp. PLL12]
ATGGCATCAATTAATAAAGTTATCCTAATTGGAAACCTGGGACGGGATCCGGAAGTACGTTATATGCCAAGCGGTGACGC
CATGGCCAATTTGAATATTGCCACCACCGATACCTGGAAAGATAAAGGTGGAGAAAAGCAAGAGCGAACCGAATGGCATC
GTGTGGTAATGTTTGGCAAGCAAGCTGAGATTGCGGGCGAATATCTCAAAAAGGGCTCTCAGGTTTATATTGAAGGGCGC
TTGCAGACACGTAAATGGACGGATAAATCTAATATTGAGCGATATACCACTGAGATCGTCGCTGACCGTATGCAAATGTT
GGGTGGCCGCGCAACCGGTGCCAGCTTCGAATCTGCTGACAGAGAAGGGGAATACAATAGCAGTGCGAGCTACGCTAATA
AACCTGCCAACTACAATAAGACAGGTAGCGGGTTTGACGATCTGGAAGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.222

100

0.61
  ssb Glaesserella parasuis strain SC1401

45

100

0.526
  ssb Neisseria meningitidis MC58

46.243

100

0.519
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.513