Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NWE71_RS27045 Genome accession   NZ_CP103291
Coordinates   5524156..5524683 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Peribacillus frigoritolerans strain NS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5519156..5529683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE71_RS27025 rplI 5520226..5520675 (-) 450 WP_095390654.1 50S ribosomal protein L9 -
  NWE71_RS27030 - 5520672..5522642 (-) 1971 WP_095390655.1 DHH family phosphoesterase -
  NWE71_RS27035 - 5522685..5523632 (-) 948 WP_095390656.1 YybS family protein -
  NWE71_RS27040 rpsR 5523869..5524108 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  NWE71_RS27045 ssbA 5524156..5524683 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  NWE71_RS27050 rpsF 5524753..5525037 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  NWE71_RS27055 ychF 5525230..5526330 (-) 1101 WP_095390657.1 redox-regulated ATPase YchF -
  NWE71_RS27060 - 5526498..5526695 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  NWE71_RS27065 - 5526716..5527552 (-) 837 WP_134782808.1 mechanosensitive ion channel family protein -
  NWE71_RS27070 yyaC 5527924..5528559 (+) 636 WP_095390659.1 spore protease YyaC -
  NWE71_RS27075 - 5528609..5529310 (-) 702 WP_053536996.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=721759 NWE71_RS27045 WP_034316149.1 5524156..5524683(-) (ssbA) [Peribacillus frigoritolerans strain NS1]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=721759 NWE71_RS27045 WP_034316149.1 5524156..5524683(-) (ssbA) [Peribacillus frigoritolerans strain NS1]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAAGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAAACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377