Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NXY85_RS16225 Genome accession   NZ_CP103290
Coordinates   3183312..3183827 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3178312..3188827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS16195 - 3178967..3179500 (-) 534 WP_010790545.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NXY85_RS16200 - 3179512..3180078 (-) 567 WP_258728464.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  NXY85_RS16205 - 3180197..3180955 (-) 759 WP_151289948.1 exodeoxyribonuclease III -
  NXY85_RS16210 - 3181151..3182071 (+) 921 WP_258728465.1 DMT family transporter -
  NXY85_RS16215 - 3182163..3182831 (+) 669 WP_106272132.1 GntR family transcriptional regulator -
  NXY85_RS16220 rpsR 3183029..3183268 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  NXY85_RS16225 ssbA 3183312..3183827 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  NXY85_RS16230 rpsF 3183867..3184154 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  NXY85_RS16235 ychF 3184267..3185367 (-) 1101 WP_003326055.1 redox-regulated ATPase YchF -
  NXY85_RS16240 - 3185495..3187498 (-) 2004 WP_258728466.1 molybdopterin-dependent oxidoreductase -
  NXY85_RS16245 - 3187548..3187754 (-) 207 WP_258728467.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=721690 NXY85_RS16225 WP_003326057.1 3183312..3183827(-) (ssbA) [Bacillus atrophaeus strain NS2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=721690 NXY85_RS16225 WP_003326057.1 3183312..3183827(-) (ssbA) [Bacillus atrophaeus strain NS2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAATGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAGGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392