Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   PVK49_RS02650 Genome accession   NZ_CP118306
Coordinates   519551..520216 (+) Length   221 a.a.
NCBI ID   WP_012560853.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514551..525216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS02625 (PVK49_02620) - 514702..516102 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  PVK49_RS02630 (PVK49_02625) - 516102..516479 (+) 378 WP_009880466.1 S1 RNA-binding domain-containing protein -
  PVK49_RS02635 (PVK49_02630) cysK 516497..517438 (-) 942 WP_373939365.1 cysteine synthase A -
  PVK49_RS02640 (PVK49_02635) - 517566..518198 (-) 633 WP_009880468.1 YigZ family protein -
  PVK49_RS02645 (PVK49_02640) comFA/cflA 518254..519579 (+) 1326 WP_047235723.1 DEAD/DEAH box helicase Machinery gene
  PVK49_RS02650 (PVK49_02645) comFC/cflB 519551..520216 (+) 666 WP_012560853.1 ComF family protein Machinery gene
  PVK49_RS02655 (PVK49_02650) hpf 520296..520844 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25189.49 Da        Isoelectric Point: 9.4626

>NTDB_id=721633 PVK49_RS02650 WP_012560853.1 519551..520216(+) (comFC/cflB) [Streptococcus pyogenes strain 20154608]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVIYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=721633 PVK49_RS02650 WP_012560853.1 519551..520216(+) (comFC/cflB) [Streptococcus pyogenes strain 20154608]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTATCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412