Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NUW46_RS13490 Genome accession   NZ_CP103058
Coordinates   2918769..2919644 (+) Length   291 a.a.
NCBI ID   WP_418140353.1    Uniprot ID   -
Organism   Marinobacter sp. MA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2913769..2924644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW46_RS13475 (NUW46_13505) - 2914833..2915306 (-) 474 WP_418140350.1 pilin -
  NUW46_RS13480 (NUW46_13510) pilB 2915738..2917453 (+) 1716 WP_418140351.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NUW46_RS13485 (NUW46_13515) pilC 2917456..2918676 (+) 1221 WP_418140352.1 type II secretion system F family protein Machinery gene
  NUW46_RS13490 (NUW46_13520) pilD 2918769..2919644 (+) 876 WP_418140353.1 prepilin peptidase Machinery gene
  NUW46_RS13495 (NUW46_13525) coaE 2919648..2920247 (+) 600 WP_418140354.1 dephospho-CoA kinase -
  NUW46_RS13500 (NUW46_13530) - 2920240..2921334 (+) 1095 WP_418140355.1 hypothetical protein -
  NUW46_RS13505 (NUW46_13535) tsaA 2921334..2922077 (+) 744 WP_418140356.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  NUW46_RS13510 (NUW46_13540) - 2922121..2924472 (+) 2352 WP_418140357.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32267.35 Da        Isoelectric Point: 6.8155

>NTDB_id=721259 NUW46_RS13490 WP_418140353.1 2918769..2919644(+) (pilD) [Marinobacter sp. MA]
MFTLDTFLATPWLLFLSVTLVSLCIGSFLNVLILRLPKMMHQDWRCQCEEFLELPEKQRKDEERITLSKPASTCPSCGHG
IRAWENVPVVSWLVLRGKCASCKAPISPRYPIIEAVTAIFSVVTITVIGPNESALWALLLVWALVALTVIDFDTQLLPDS
ITLPLMWLGLVLNYFGVLTDFNSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSV
VGAVVGISLMVFRKHGREVPIPFGPYLATAGLICLWFGSEIQAFWFGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=721259 NUW46_RS13490 WP_418140353.1 2918769..2919644(+) (pilD) [Marinobacter sp. MA]
ATGTTTACTCTGGATACGTTTCTCGCCACGCCCTGGCTCCTTTTTCTTTCTGTCACTCTAGTATCCCTGTGCATCGGCAG
CTTCCTGAATGTTTTGATTCTGAGGCTGCCGAAAATGATGCACCAGGACTGGCGCTGCCAGTGCGAGGAATTCCTGGAGC
TGCCTGAAAAACAGCGTAAAGATGAAGAACGGATTACCCTGTCCAAACCGGCTTCCACCTGCCCTTCCTGCGGCCATGGC
ATTCGGGCCTGGGAAAATGTTCCGGTGGTCAGTTGGCTGGTTCTTAGGGGTAAATGTGCTTCCTGCAAAGCCCCCATCTC
GCCCCGCTATCCGATCATTGAGGCAGTCACCGCGATTTTTTCCGTGGTGACCATTACTGTCATCGGACCGAACGAGTCGG
CGCTCTGGGCCCTTTTGCTGGTTTGGGCTCTGGTGGCCCTAACCGTGATTGATTTCGACACTCAGCTGCTGCCAGACAGT
ATTACTCTGCCCCTGATGTGGCTCGGACTGGTACTGAATTATTTCGGTGTGCTTACGGACTTCAACAGTGCCTTTTGGGG
GGCGGTGGCCGGGTATCTTTCGCTTTGGTCGGTTTACTGGCTATTCAAGCTGGTTACAGGCAAGGAAGGTATGGGGCACG
GGGACTTTAAATTGCTGGCTGCGCTCGGCGCCTGGCTGGGGTGGCAGTTGTTGCCGGCGGTGATTCTGCTTTCTTCGGTG
GTTGGTGCGGTTGTTGGTATTAGCCTGATGGTGTTCAGGAAGCATGGGCGGGAGGTGCCGATTCCGTTTGGGCCTTATCT
GGCGACGGCGGGGTTGATTTGTTTGTGGTTTGGGAGTGAGATTCAGGCGTTCTGGTTTGGCTTTCTGGGAGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-125)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.839

94.158

0.526
  pilD Acinetobacter nosocomialis M2

55.109

94.158

0.519
  pilD Vibrio cholerae strain A1552

51.579

97.938

0.505
  pilD Vibrio campbellii strain DS40M4

51.228

97.938

0.502
  pilD Neisseria gonorrhoeae MS11

49.804

87.629

0.436