Detailed information NTG0721258

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NUW46_RS13485
• Genome accession: NZ_CP103058
• Coordinates: 2917456..2918676 (+)
• Length: 406 a.a.
• NCBI ID: WP_418140352.1
• Uniprot ID: -
• Organism: Marinobacter sp. MA
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2912456..2923676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUW46_RS13470 (NUW46_13500)	-	2913335..2914765 (-)	1431	WP_418140349.1	O-antigen ligase family protein	-
NUW46_RS13475 (NUW46_13505)	-	2914833..2915306 (-)	474	WP_418140350.1	pilin	-
NUW46_RS13480 (NUW46_13510)	pilB	2915738..2917453 (+)	1716	WP_418140351.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NUW46_RS13485 (NUW46_13515)	pilC	2917456..2918676 (+)	1221	WP_418140352.1	type II secretion system F family protein	Machinery gene
NUW46_RS13490 (NUW46_13520)	pilD	2918769..2919644 (+)	876	WP_418140353.1	prepilin peptidase	Machinery gene
NUW46_RS13495 (NUW46_13525)	coaE	2919648..2920247 (+)	600	WP_418140354.1	dephospho-CoA kinase	-
NUW46_RS13500 (NUW46_13530)	-	2920240..2921334 (+)	1095	WP_418140355.1	hypothetical protein	-
NUW46_RS13505 (NUW46_13535)	tsaA	2921334..2922077 (+)	744	WP_418140356.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44398.17 Da
• Isoelectric Point: 9.0203

>NTDB_id=721258 NUW46_RS13485 WP_418140352.1 2917456..2918676(+) (pilC) [Marinobacter sp. MA]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTSFAGALRKHPKYFDDLYCNLVDSGEKAGALEAMLDRIATYLEKT
ENLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGAELPVFTQMVVELSEWLQSWWFVVLLGIVGTIFLFK
EAKRRSQRFSDIVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDEMLAKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide

• Length: 1221 bp

>NTDB_id=721258 NUW46_RS13485 WP_418140352.1 2917456..2918676(+) (pilC) [Marinobacter sp. MA]
ATGGCAGAGAAAGCGCAGAAGCTGGAATCGTACGTTTGGGAAGGTAAAGACCGAAAGGGCAATAAGTCCAAGGGCGAGCT
AACAGGCTCCAACCTCGCGCTGGTTAAGGCCCAACTTCGCAAGCAAGGCATTATTCCGGATAAGGTCAAGAAGAAGCCCA
AGCCGCTTTTCGGTGGTAGCAAGAAGATTACCCCCTTCGACATTGCCATGCTGACTCGTCAGCTTGCGACGATGATGAAG
GCGGGCGTGCCACTGGTACAGAGCTTTGACATTGTTGCCGATGGCCTAGAGAACAAGGGGCTTCAGGAACTGGTTATGAG
TATTCGAAATGATATTTCTTCGGGTACCAGTTTCGCAGGCGCGTTACGCAAACACCCCAAGTATTTTGACGACCTATATT
GCAACCTTGTGGATTCGGGTGAAAAAGCCGGTGCGCTGGAAGCGATGCTGGATCGAATTGCGACTTACCTTGAGAAGACA
GAAAACCTTAAGAAAAAAGTAAAAAAAGCAATGACATACCCTATCGCGGTTATTGTAGTCGCGATTGTCGTTACTGCCAT
TCTGCTTGTTAAGGTCGTACCTCAGTTCGAGAGCCTTTTCCAGGGTTTTGGGGCAGAACTGCCCGTCTTTACCCAAATGG
TCGTGGAACTATCGGAATGGCTACAAAGCTGGTGGTTTGTGGTCTTGCTCGGAATTGTGGGAACCATTTTCCTTTTTAAA
GAGGCTAAACGCCGCTCTCAGAGATTTTCAGACATTGTCGACAAATACGTTCTGAAACTGCCCGTGGTAGGTGAGATACT
CGACAAATCAGCTGTAGCAAAATTCGGCCGAGTACTCTCAACTACCTTTGCTGCCGGCGTTCCATTGGTGGATGCACTTG
ACTCAGTAGCAGGCGCAACAGGCAACGCAGTTTACCGTGATGCCATCGACCGAATTAAGAACGACGTATCAAGCGGCACC
CAACTCCAGGCATCCATGCGACAACAGGACGTATTCCCGGTAATGGCAGTCCAGCTAACAGCAATTGGCGAAGAGTCCGG
TAACCTGGACGAGATGCTGGCCAAGGTGGCGGAGCACTACGAAGCAGTGGTCGACGACATGGTCGATAACCTGACTGCCC
TTATGGAGCCAATGATCATGGCGGTTCTGGGTGTTCTGGTGGGTGGCTTGATCATTGCCATGTATCTGCCGATCTTCCAG
ATGGGTCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	67.407	99.754	0.672
pilC	Acinetobacter baylyi ADP1	58.867	100	0.589
pilC	Acinetobacter baumannii D1279779	58.272	99.754	0.581
pilC	Legionella pneumophila strain ERS1305867	52.956	100	0.53
pilG	Neisseria gonorrhoeae MS11	43.457	99.754	0.433
pilG	Neisseria meningitidis 44/76-A	43.103	100	0.431
pilC	Vibrio cholerae strain A1552	40.148	100	0.401
pilC	Vibrio campbellii strain DS40M4	39.803	100	0.399