Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NUW46_RS03520 Genome accession   NZ_CP103058
Coordinates   760728..761252 (+) Length   174 a.a.
NCBI ID   WP_069185089.1    Uniprot ID   A0A1E3C5N3
Organism   Marinobacter sp. MA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 755728..766252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW46_RS03510 (NUW46_03520) uvrA 756291..759113 (-) 2823 WP_069185087.1 excinuclease ABC subunit UvrA -
  NUW46_RS03515 (NUW46_03525) - 759300..760670 (+) 1371 WP_069185088.1 MFS transporter -
  NUW46_RS03520 (NUW46_03530) ssb 760728..761252 (+) 525 WP_069185089.1 single-stranded DNA-binding protein Machinery gene
  NUW46_RS03525 (NUW46_03535) - 761488..762420 (+) 933 WP_228744654.1 biogenesis protein MshI -
  NUW46_RS03530 (NUW46_03540) - 762417..763022 (+) 606 WP_069185091.1 PilN domain-containing protein -
  NUW46_RS03535 (NUW46_03545) gspM 763022..763711 (+) 690 WP_418141369.1 type II secretion system protein GspM -
  NUW46_RS03540 (NUW46_03550) - 763755..764060 (+) 306 WP_227514620.1 hypothetical protein -
  NUW46_RS03545 (NUW46_03555) mshL 764078..765790 (+) 1713 WP_209398983.1 pilus (MSHA type) biogenesis protein MshL -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19012.05 Da        Isoelectric Point: 4.9464

>NTDB_id=721243 NUW46_RS03520 WP_069185089.1 760728..761252(+) (ssb) [Marinobacter sp. MA]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMNQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=721243 NUW46_RS03520 WP_069185089.1 760728..761252(+) (ssb) [Marinobacter sp. MA]
ATGGCACGAGGCGTAAACAAAGTAATTCTGATCGGTAACCTGGGACAGGACCCGGATACCCGCTACACCCCTAACGGTAA
TGCCGTTGTGAACCTGAATCTGGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGGCAATTGGTGCCAAAAACCGAAT
GGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTGGCGGGCCAGTATCTGCGCAAGGGCTCGAAGGTCTACATTGAG
GGCAAGTTGCAGACGCGCAAATGGCAGAACAAGGAAGGTCAGGATGTCTACACCACCGAGGTTGTGGTGGATATCAACGG
CCAGATGCAGATGCTCGACAGCCGTGGCGGCGAAGGCGGTATGAATCAGGGCGCCCCGGCAGGGCGGCCTCAGCAGTCCG
GCTATAATGCCCCGGCGGGCCAACAGAACAATCCGCCACCGCAGTCAGGTGGGTACAGCAATCAGCCGTCGCAGGGCAGC
ATGCCGGAGCCGGTAGACGACTTTGACGATGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3C5N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

54.348

100

0.575
  ssb Neisseria gonorrhoeae MS11

44.134

100

0.454
  ssb Neisseria meningitidis MC58

43.575

100

0.448