Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NV391_RS02750 Genome accession   NZ_CP103039
Coordinates   537811..538086 (+) Length   91 a.a.
NCBI ID   WP_274765354.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532811..543086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS02735 (NV391_02740) - 535049..535786 (+) 738 WP_057866612.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NV391_RS02740 (NV391_02745) comGA 535879..536832 (+) 954 Protein_509 competence type IV pilus ATPase ComGA -
  NV391_RS02745 (NV391_02750) - 536798..537811 (+) 1014 WP_057866610.1 type II secretion system F family protein -
  NV391_RS02750 (NV391_02755) comGC 537811..538086 (+) 276 WP_274765354.1 competence type IV pilus major pilin ComGC Machinery gene
  NV391_RS02755 (NV391_02760) - 538083..538526 (+) 444 WP_057866608.1 type II secretion system protein -
  NV391_RS02760 (NV391_02765) - 538510..538797 (+) 288 WP_075887485.1 hypothetical protein -
  NV391_RS02765 (NV391_02770) - 538769..539218 (+) 450 WP_057866606.1 competence type IV pilus minor pilin ComGF -
  NV391_RS02770 (NV391_02775) - 539484..540497 (+) 1014 WP_274765355.1 class I SAM-dependent methyltransferase -
  NV391_RS02775 (NV391_02780) - 540508..541704 (+) 1197 WP_274765356.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10634.56 Da        Isoelectric Point: 8.4500

>NTDB_id=721127 NV391_RS02750 WP_274765354.1 537811..538086(+) (comGC) [Companilactobacillus crustorum strain X66]
MKKIHKAFTLIEMVIVLFIISLLLLIMIPNLVAQKNHAEDRSQETFITTIKTQKELYSDNEGKIPSLGELEKEKYITQKQ
YEKAQKIDELK

Nucleotide


Download         Length: 276 bp        

>NTDB_id=721127 NV391_RS02750 WP_274765354.1 537811..538086(+) (comGC) [Companilactobacillus crustorum strain X66]
ATGAAAAAAATTCACAAGGCTTTTACTTTAATTGAGATGGTAATTGTACTTTTTATTATTTCACTGTTGTTACTAATTAT
GATCCCTAATTTGGTGGCTCAAAAAAATCATGCTGAAGATAGATCCCAAGAAACATTTATTACAACCATCAAAACTCAGA
AGGAACTATATTCTGATAACGAAGGAAAAATACCTTCATTGGGTGAATTAGAAAAAGAAAAATATATAACTCAAAAACAA
TATGAAAAAGCTCAAAAAATTGATGAACTAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

53.488

94.505

0.505
  comYC Streptococcus mutans UA140

42.857

92.308

0.396
  comYC Streptococcus mutans UA159

42.857

92.308

0.396
  comYC Streptococcus gordonii str. Challis substr. CH1

40.476

92.308

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

41.975

89.011

0.374