Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   NW971_RS08120 Genome accession   NZ_CP102962
Coordinates   1652436..1653506 (-) Length   356 a.a.
NCBI ID   WP_000776405.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0212     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647436..1658506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW971_RS08080 (NW971_08080) gcvPA 1647613..1648959 (-) 1347 WP_210602827.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW971_RS08085 (NW971_08085) gcvT 1648979..1650070 (-) 1092 WP_258464271.1 glycine cleavage system aminomethyltransferase GcvT -
  NW971_RS08090 (NW971_08090) - 1650229..1650753 (-) 525 WP_258464272.1 shikimate kinase -
  NW971_RS08095 (NW971_08095) - 1650743..1650889 (-) 147 WP_001789879.1 hypothetical protein -
  NW971_RS08100 (NW971_08100) comGF 1650986..1651483 (-) 498 WP_029693246.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW971_RS08105 (NW971_08105) comGE 1651401..1651700 (-) 300 WP_258464273.1 competence protein ComGE Machinery gene
  NW971_RS08110 (NW971_08110) comGD 1651687..1652133 (-) 447 WP_258464274.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW971_RS08115 (NW971_08115) comGC 1652111..1652422 (-) 312 WP_111762334.1 competence type IV pilus major pilin ComGC Machinery gene
  NW971_RS08120 (NW971_08120) comGB 1652436..1653506 (-) 1071 WP_000776405.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW971_RS08125 (NW971_08125) comGA 1653478..1654452 (-) 975 WP_258464275.1 competence type IV pilus ATPase ComGA Machinery gene
  NW971_RS08130 (NW971_08130) - 1654504..1655127 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW971_RS08135 (NW971_08135) - 1655124..1655453 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW971_RS08140 (NW971_08140) - 1655453..1656439 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW971_RS08145 (NW971_08145) - 1656436..1656639 (-) 204 WP_258464276.1 YqgQ family protein -
  NW971_RS08150 (NW971_08150) - 1656620..1658083 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41401.86 Da        Isoelectric Point: 10.1030

>NTDB_id=720626 NW971_RS08120 WP_000776405.1 1652436..1653506(-) (comGB) [Staphylococcus aureus strain 16CS0212]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGATILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=720626 NW971_RS08120 WP_000776405.1 1652436..1653506(-) (comGB) [Staphylococcus aureus strain 16CS0212]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTGCCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAGTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCACTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992