Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW971_RS08100 Genome accession   NZ_CP102962
Coordinates   1650986..1651483 (-) Length   165 a.a.
NCBI ID   WP_029693246.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0212     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645986..1656483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW971_RS08075 (NW971_08075) gcvPB 1646148..1647620 (-) 1473 WP_000202177.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW971_RS08080 (NW971_08080) gcvPA 1647613..1648959 (-) 1347 WP_210602827.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW971_RS08085 (NW971_08085) gcvT 1648979..1650070 (-) 1092 WP_258464271.1 glycine cleavage system aminomethyltransferase GcvT -
  NW971_RS08090 (NW971_08090) - 1650229..1650753 (-) 525 WP_258464272.1 shikimate kinase -
  NW971_RS08095 (NW971_08095) - 1650743..1650889 (-) 147 WP_001789879.1 hypothetical protein -
  NW971_RS08100 (NW971_08100) comGF 1650986..1651483 (-) 498 WP_029693246.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW971_RS08105 (NW971_08105) comGE 1651401..1651700 (-) 300 WP_258464273.1 competence protein ComGE Machinery gene
  NW971_RS08110 (NW971_08110) comGD 1651687..1652133 (-) 447 WP_258464274.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW971_RS08115 (NW971_08115) comGC 1652111..1652422 (-) 312 WP_111762334.1 competence type IV pilus major pilin ComGC Machinery gene
  NW971_RS08120 (NW971_08120) comGB 1652436..1653506 (-) 1071 WP_000776405.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW971_RS08125 (NW971_08125) comGA 1653478..1654452 (-) 975 WP_258464275.1 competence type IV pilus ATPase ComGA Machinery gene
  NW971_RS08130 (NW971_08130) - 1654504..1655127 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW971_RS08135 (NW971_08135) - 1655124..1655453 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW971_RS08140 (NW971_08140) - 1655453..1656439 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2192

>NTDB_id=720622 NW971_RS08100 WP_029693246.1 1650986..1651483(-) (comGF) [Staphylococcus aureus strain 16CS0212]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=720622 NW971_RS08100 WP_029693246.1 1650986..1651483(-) (comGF) [Staphylococcus aureus strain 16CS0212]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATTAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

97.576

100

0.976
  comGF Staphylococcus aureus N315

97.576

100

0.976