Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW961_RS10235 Genome accession   NZ_CP102955
Coordinates   2092549..2092944 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28-G-I     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2087549..2097944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW961_RS10210 (NW961_10210) thiE 2088011..2088652 (-) 642 WP_258412245.1 thiamine phosphate synthase -
  NW961_RS10215 (NW961_10215) thiM 2088654..2089445 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  NW961_RS10220 (NW961_10220) thiD 2089429..2090259 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW961_RS10225 (NW961_10225) tenA 2090252..2090941 (-) 690 WP_258412246.1 thiaminase II -
  NW961_RS10230 (NW961_10230) sceD 2091465..2092160 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  NW961_RS10235 (NW961_10235) ssb 2092549..2092944 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW961_RS10240 (NW961_10240) - 2093138..2093578 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW961_RS10245 (NW961_10245) fabZ 2093637..2094077 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW961_RS10250 (NW961_10250) murA 2094111..2095376 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW961_RS10255 (NW961_10255) - 2095487..2095720 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW961_RS10260 (NW961_10260) - 2095852..2095944 (-) 93 WP_001790611.1 hypothetical protein -
  NW961_RS10265 (NW961_10265) - 2096340..2096744 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720352 NW961_RS10235 WP_000932694.1 2092549..2092944(-) (ssb) [Staphylococcus aureus strain 28-G-I]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720352 NW961_RS10235 WP_000932694.1 2092549..2092944(-) (ssb) [Staphylococcus aureus strain 28-G-I]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGACAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992