Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PT280_RS08875 Genome accession   NZ_CP118014
Coordinates   1814588..1815325 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B-766     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809588..1820325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT280_RS08845 yfiL 1809746..1810111 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  PT280_RS08850 aroF 1810321..1811391 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PT280_RS08855 tyrA 1811402..1812523 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PT280_RS08860 pheA 1812566..1813726 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  PT280_RS08865 pheL 1813825..1813872 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PT280_RS08870 raiA 1813976..1814317 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PT280_RS08875 comL 1814588..1815325 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PT280_RS08880 rluD 1815460..1816440 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PT280_RS08885 yfiH 1816437..1817168 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  PT280_RS08890 clpC 1817298..1819871 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=720277 PT280_RS08875 WP_000197686.1 1814588..1815325(-) (comL) [Escherichia coli strain B-766]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=720277 PT280_RS08875 WP_000197686.1 1814588..1815325(-) (comL) [Escherichia coli strain B-766]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376