Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PUN50_RS10430 Genome accession   NZ_CP117988
Coordinates   2258461..2259048 (-) Length   195 a.a.
NCBI ID   WP_005428539.1    Uniprot ID   A0AAQ2XWF3
Organism   Vibrio campbellii strain 20220413_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2253461..2264048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS10410 (PUN50_10410) - 2253609..2254871 (-) 1263 WP_105065138.1 DUF945 family protein -
  PUN50_RS10415 (PUN50_10415) - 2255057..2256997 (+) 1941 WP_274290340.1 ATP-binding protein -
  PUN50_RS10420 (PUN50_10420) - 2256994..2257491 (+) 498 WP_005529183.1 response regulator -
  PUN50_RS10425 (PUN50_10425) - 2257700..2258248 (+) 549 WP_005428519.1 hypothetical protein -
  PUN50_RS10430 (PUN50_10430) tfoX 2258461..2259048 (-) 588 WP_005428539.1 TfoX/Sxy family DNA transformation protein Regulator
  PUN50_RS10435 (PUN50_10435) - 2259419..2260339 (+) 921 WP_005428540.1 HDOD domain-containing protein -
  PUN50_RS10440 (PUN50_10440) - 2260447..2261352 (+) 906 WP_050913475.1 lysine exporter LysO family protein -
  PUN50_RS10445 (PUN50_10445) - 2261562..2262074 (+) 513 WP_038891356.1 hypothetical protein -
  PUN50_RS10450 (PUN50_10450) panP 2262196..2263842 (+) 1647 WP_274290341.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22337.57 Da        Isoelectric Point: 6.4656

>NTDB_id=720199 PUN50_RS10430 WP_005428539.1 2258461..2259048(-) (tfoX) [Vibrio campbellii strain 20220413_1]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=720199 PUN50_RS10430 WP_005428539.1 2258461..2259048(-) (tfoX) [Vibrio campbellii strain 20220413_1]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTCACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTCGATTCCGGTTTTGCTGGGTTGGATGAGCTGCTACAAAAGTCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CTGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAATAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTACTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2XWF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

100

100

1
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579