Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PUN50_RS05825 Genome accession   NZ_CP117988
Coordinates   1238961..1240991 (+) Length   676 a.a.
NCBI ID   WP_045379097.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233961..1245991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS05805 (PUN50_05805) sph 1234242..1235729 (+) 1488 WP_274291004.1 sphingomyelin phosphodiesterase -
  PUN50_RS05810 (PUN50_05810) - 1236359..1237690 (+) 1332 WP_086369099.1 excinuclease ABC subunit B -
  PUN50_RS05815 (PUN50_05815) - 1237710..1238150 (+) 441 WP_038889848.1 hypothetical protein -
  PUN50_RS05825 (PUN50_05825) uvrB 1238961..1240991 (+) 2031 WP_045379097.1 excinuclease ABC subunit UvrB Machinery gene
  PUN50_RS05830 (PUN50_05830) luxO 1241334..1242737 (+) 1404 WP_038889850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PUN50_RS05835 (PUN50_05835) luxU 1242734..1243078 (+) 345 WP_274291005.1 quorum-sensing phosphorelay protein LuxU -
  PUN50_RS05840 (PUN50_05840) - 1243195..1244088 (-) 894 WP_005531401.1 YvcK family protein -
  PUN50_RS05845 (PUN50_05845) moaA 1244386..1245375 (+) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  PUN50_RS05850 (PUN50_05850) moaB 1245476..1245988 (+) 513 WP_274291006.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77063.62 Da        Isoelectric Point: 4.7490

>NTDB_id=720186 PUN50_RS05825 WP_045379097.1 1238961..1240991(+) (uvrB) [Vibrio campbellii strain 20220413_1]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDSGLAHQTLLGVTGSGKTFTLANVIAEAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNY
ELEKSADEIADQVVRPTGLLDPELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIKGKAILYADSITK
SMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAQKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=720186 PUN50_RS05825 WP_045379097.1 1238961..1240991(+) (uvrB) [Vibrio campbellii strain 20220413_1]
ATGAGTAAAGTTTATGAACTGGTCTCTGAATATCAACCATCCGGTGATCAGCCAACCGCCATCAAACAGTTATTAGAGGG
TTTAGACTCAGGCCTTGCCCATCAGACTCTGTTGGGTGTAACGGGCTCAGGTAAAACATTCACACTGGCAAACGTAATTG
CAGAAGCGCAGCGTCCGGCGATTCTTCTCGCGCCAAACAAAACACTTGCCGCGCAACTGTACGGTGAGATGAAAGCCTTC
TTCCCAAATAATGCCGTTGAATACTTCGTTTCTTACTACGATTACTATCAACCCGAAGCTTACGTGCCAACGACGGATAC
CTTTATTGAAAAAGACGCGTCAGTGAATGCCCACATAGAGCAGATGCGTTTATCGGCAACAAAAGCATTATTGGAACGCA
AAGATGCCATCATTGTTGCATCGGTTTCGGCCATTTATGGTTTGGGTGACCCAGAGTCGTACCTACAAATGATGCTACAC
TTGCGCCGCGGTGATGTGATTGATCAGCGTGATATGTTGCGTCGTCTTGCAGAACTTCAATATTCACGTAACGATGTTGC
GTTTGAGCGTGGCCAGTTCCGCGTGCGTGGTGAAGTGATTGACATCTTCCCGGCGGAATCAGACCAAGACGCTGTGCGCG
TAGAGATGTTTGACGATGAAGTCGACTGTATCAGCGTATTTGACCCATTGACTGGTGTGGTTAAACAGCGAGACCTGCCG
CGTTATACGATTTACCCAAAGACGCACTATGTCACGCCACGTGAGCGTATTCTTGATGCCATTGAAAGCATTAAAGACGA
GCTTGAAGTGCGTAAGAAGCAGCTGTTAGACAACAACAAGCTTCTAGAAGAGCAACGTATCAGCCAACGCACTCAATTTG
ACATTGAGATGATGAACGAGCTGGGTTTCTGTTCCGGTATCGAAAACTACTCTCGTTACTTAAGTGGACGAGCGGAGGGG
GAGCCGCCACCAACGCTATTTGACTACTTACCTCACGATGGCTTGCTGATCATCGACGAATCACACGTTACCGTACCGCA
AATTGGCGCGATGTATAAAGGTGACCGCTCACGTAAAGAGACGCTGGTAGAGTTTGGTTTCCGTTTGCCTTCTGCATTGG
ATAACCGCCCGATGAAATTCGAAGAGTTCGAGGCGATTTCTCCACAGACAATATTTGTTTCTGCAACGCCGGGTAACTAC
GAACTTGAGAAGTCAGCCGATGAGATTGCGGACCAGGTTGTGCGTCCAACGGGTCTGCTTGATCCGGAATTAGAAGTTCG
CCCAGTTGCTACTCAGGTTGATGATCTGTTGTCTGAGATTCGAATTCGCGCAGCGCAAGACGAGCGTGTTCTTGTGACGA
CGCTAACCAAGCGTATGGCAGAAGACTTAACCGAATACCTGCACGAGCACGATGTGAAAGTTCGTTACCTTCACTCAGAC
ATTGACACGGTTGAGCGTGTAGAAATCATTCGCGACCTTCGTTTGGGTGAATTTGATGTGTTGGTTGGGATCAACTTACT
GCGAGAAGGTCTCGATATGCCAGAAGTGTCGCTGGTGGCAATCTTGGATGCAGATAAGGAAGGCTTCTTGCGTTCAGAGC
GTTCATTGATTCAGACCATTGGTCGTGCGGCTCGTAACATCAAAGGTAAAGCGATTCTTTACGCAGATTCGATCACTAAG
TCGATGAAGAAAGCGATGGACGAAACAGATCGTCGTCGCGAGAAGCAAAAAGCGTATAACGCAGAGATGGGTATTGAGCC
TCAAGCCTTGAAGCGAAATATTAAAGACATCATGGAGTTGGGGGATATCACCAAATCGAAGCGTCAGCGTAATACTAAGC
AAGTGCCGCTATCGAAAGTGGCAGAGCCTTCTCAGACTTACGAGATCATGTCTCCACAACAGCTGGAGAAGGAGATCAGT
CGTTTGGAAGCGGCGATGTACCAACACGCTCAAGATCTTGAATTTGAATTGGCGGCTCAGAAACGTGACGAGATTGAAAA
GCTGCGCGCTCAATTTATCGCGAACAGTTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.556

98.521

0.547
  uvrB Streptococcus pneumoniae R6

55.556

98.521

0.547
  uvrB Streptococcus pneumoniae D39

55.556

98.521

0.547