Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKTUA_RS14825 Genome accession   NZ_AP018946
Coordinates   3119329..3119850 (+) Length   173 a.a.
NCBI ID   WP_006815962.1    Uniprot ID   A0A379G0K2
Organism   Providencia rustigianii strain JH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3114329..3124850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTUA_RS14815 (PRJH_2765) - 3114939..3116135 (+) 1197 WP_039855722.1 amino acid aminotransferase -
  ACKTUA_RS14820 (PRJH_2766) uvrA 3116193..3119026 (-) 2834 Protein_2885 excinuclease ABC subunit UvrA -
  ACKTUA_RS14825 (PRJH_2767) ssb 3119329..3119850 (+) 522 WP_006815962.1 single-stranded DNA-binding protein Machinery gene
  ACKTUA_RS14830 (PRJH_2768) - 3120227..3122449 (-) 2223 WP_407901239.1 AAA family ATPase -
  ACKTUA_RS14835 ivbL 3122764..3122853 (+) 90 WP_112837526.1 ilvB operon leader peptide IvbL -
  ACKTUA_RS14840 (PRJH_2769) ilvB 3122954..3124651 (+) 1698 WP_126436342.1 acetolactate synthase large subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18535.56 Da        Isoelectric Point: 4.9468

>NTDB_id=72012 ACKTUA_RS14825 WP_006815962.1 3119329..3119850(+) (ssb) [Providencia rustigianii strain JH-1]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPAAAQQFSGGGAAPARTQAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=72012 ACKTUA_RS14825 WP_006815962.1 3119329..3119850(+) (ssb) [Providencia rustigianii strain JH-1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTAGCTAACCTGACTCTGGCGACTTCTGAAAGTTGGCGTGACAAGCAATCCGGTGAAATGCGTGAAAAAACAG
AATGGCACCGTGTTGTGATTTTCGGCAAATTAGCTGAAGTTGCCGGTGAATATCTGAAAAAGGGTTCACAAGTTTATATT
GAAGGTTCATTGCAAACACGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACACCACCGAAGTTGTCGTGAACATCGG
CGGTTCAATGCAGATGCTGGGTGGTCGCGGTGGCGATGCGCCATCACAAGGTCAAGGTGGGCAAGGTGGTTGGGGTCAAC
CACAACAGCCAGCAGCGGCTCAACAGTTCAGTGGCGGCGGCGCAGCTCCTGCACGTACTCAAGCTCCTGCACCTCAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379G0K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.652

100

0.751
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.613
  ssb Neisseria meningitidis MC58

48.315

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.491

Multiple sequence alignment