Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NW342_RS26405 Genome accession   NZ_CP102944
Coordinates   5615940..5617277 (+) Length   445 a.a.
NCBI ID   WP_241363068.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5610940..5622277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW342_RS26380 (NW342_26380) pgeF 5611084..5611812 (-) 729 WP_033991129.1 peptidoglycan editing factor PgeF -
  NW342_RS26385 (NW342_26385) rluD 5611809..5612771 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NW342_RS26390 (NW342_26390) - 5612916..5613941 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  NW342_RS26395 (NW342_26395) - 5614098..5614343 (+) 246 WP_009316269.1 PP0621 family protein -
  NW342_RS26400 (NW342_26400) pilS 5614333..5615925 (+) 1593 WP_003110428.1 two-component system sensor histidine kinase PilS Regulator
  NW342_RS26405 (NW342_26405) pilR 5615940..5617277 (+) 1338 WP_241363068.1 two-component system response regulator PilR Regulator
  NW342_RS26410 (NW342_26410) thiO 5617323..5618417 (-) 1095 WP_033991130.1 glycine oxidase ThiO -
  NW342_RS26415 (NW342_26415) - 5618557..5619057 (+) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  NW342_RS26420 (NW342_26420) - 5619180..5619668 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  NW342_RS26425 (NW342_26425) pilV 5619678..5620202 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  NW342_RS26430 (NW342_26430) - 5620211..5621026 (+) 816 WP_016254061.1 PilW family protein -
  NW342_RS26435 (NW342_26435) - 5621023..5621628 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49709.01 Da        Isoelectric Point: 5.8638

>NTDB_id=720049 NW342_RS26405 WP_241363068.1 5615940..5617277(+) (pilR) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCASHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=720049 NW342_RS26405 WP_241363068.1 5615940..5617277(+) (pilR) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGCCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCTCCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCACCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGATATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

51.416

100

0.53
  luxO Vibrio cholerae strain A1552

37.946

100

0.382