Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NW342_RS26425 Genome accession   NZ_CP102944
Coordinates   5619678..5620202 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5614678..5625202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW342_RS26405 (NW342_26405) pilR 5615940..5617277 (+) 1338 WP_241363068.1 two-component system response regulator PilR Regulator
  NW342_RS26410 (NW342_26410) thiO 5617323..5618417 (-) 1095 WP_033991130.1 glycine oxidase ThiO -
  NW342_RS26415 (NW342_26415) - 5618557..5619057 (+) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  NW342_RS26420 (NW342_26420) - 5619180..5619668 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  NW342_RS26425 (NW342_26425) pilV 5619678..5620202 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  NW342_RS26430 (NW342_26430) - 5620211..5621026 (+) 816 WP_016254061.1 PilW family protein -
  NW342_RS26435 (NW342_26435) - 5621023..5621628 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  NW342_RS26440 (NW342_26440) - 5621642..5625118 (+) 3477 WP_023100239.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=720050 NW342_RS26425 WP_003116261.1 5619678..5620202(+) (pilV) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=720050 NW342_RS26425 WP_003116261.1 5619678..5620202(+) (pilV) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598