Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT723_RS23295 Genome accession   NZ_CP117971
Coordinates   4734208..4734744 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B-1109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4729208..4739744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT723_RS23275 soxR 4730936..4731400 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PT723_RS23280 soxS 4731486..4731809 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PT723_RS23285 pdeC 4731812..4733398 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PT723_RS23290 yjcB 4733828..4734109 (+) 282 WP_001295689.1 YjcB family protein -
  PT723_RS23295 ssb 4734208..4734744 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PT723_RS23300 uvrA 4734998..4737820 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PT723_RS23305 yjbR 4737855..4738211 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PT723_RS23310 yjbQ 4738215..4738631 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PT723_RS23315 aphA 4738742..4739455 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=719957 PT723_RS23295 WP_000168305.1 4734208..4734744(-) (ssb) [Escherichia coli strain B-1109]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=719957 PT723_RS23295 WP_000168305.1 4734208..4734744(-) (ssb) [Escherichia coli strain B-1109]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489