Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NVB75_RS16615 Genome accession   NZ_CP102929
Coordinates   3640153..3640671 (-) Length   172 a.a.
NCBI ID   WP_003210042.1    Uniprot ID   A0A1R0G976
Organism   Pseudomonas sp. CBS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3635153..3645671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVB75_RS16590 (NVB75_16590) - 3635367..3636476 (-) 1110 WP_258342410.1 DUF3182 family protein -
  NVB75_RS16595 (NVB75_16595) - 3636649..3637629 (-) 981 WP_258342412.1 GlxA family transcriptional regulator -
  NVB75_RS16600 (NVB75_16600) - 3637725..3638276 (+) 552 WP_258342414.1 cysteine hydrolase family protein -
  NVB75_RS16605 (NVB75_16605) tam 3638289..3639050 (-) 762 WP_258342415.1 trans-aconitate 2-methyltransferase -
  NVB75_RS16610 (NVB75_16610) - 3639154..3640062 (+) 909 WP_258342416.1 LysR family transcriptional regulator -
  NVB75_RS16615 (NVB75_16615) ssb 3640153..3640671 (-) 519 WP_003210042.1 single-stranded DNA-binding protein Machinery gene
  NVB75_RS16620 (NVB75_16620) - 3640681..3642075 (-) 1395 WP_003210044.1 MFS transporter -
  NVB75_RS16625 (NVB75_16625) uvrA 3642254..3645088 (+) 2835 WP_010174605.1 excinuclease ABC subunit UvrA -
  NVB75_RS16630 (NVB75_16630) bfr 3645157..3645621 (-) 465 WP_003210048.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19131.30 Da        Isoelectric Point: 5.9455

>NTDB_id=719794 NVB75_RS16615 WP_003210042.1 3640153..3640671(-) (ssb) [Pseudomonas sp. CBS]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=719794 NVB75_RS16615 WP_003210042.1 3640153..3640671(-) (ssb) [Pseudomonas sp. CBS]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCGACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0G976

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.218

100

0.616
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.5
  ssb Neisseria meningitidis MC58

46.961

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.494