Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   NW313_RS10865 Genome accession   NZ_CP102927
Coordinates   2403330..2404013 (+) Length   227 a.a.
NCBI ID   WP_001082313.1    Uniprot ID   -
Organism   Vibrio cholerae strain N1252     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2398330..2409013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW313_RS10835 - 2399290..2400306 (-) 1017 WP_000862956.1 YqaJ viral recombinase family protein -
  NW313_RS10840 - 2400367..2400510 (-) 144 WP_000167277.1 hypothetical protein -
  NW313_RS10845 bet 2400592..2401410 (-) 819 WP_000414662.1 phage recombination protein Bet -
  NW313_RS10850 - 2401490..2401909 (-) 420 WP_000795985.1 single-stranded DNA-binding protein -
  NW313_RS10855 - 2401925..2402251 (-) 327 WP_000455723.1 hypothetical protein -
  NW313_RS10860 - 2402619..2403221 (+) 603 WP_000035785.1 hypothetical protein -
  NW313_RS10865 ideA 2403330..2404013 (+) 684 WP_001082313.1 endonuclease Regulator
  NW313_RS10870 - 2404244..2405260 (+) 1017 WP_001918293.1 AAA family ATPase -
  NW313_RS10875 istA 2405368..2406867 (+) 1500 WP_001920874.1 IS21 family transposase -
  NW313_RS10880 istB 2406857..2407612 (+) 756 WP_000546748.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26424.51 Da        Isoelectric Point: 7.5402

>NTDB_id=719761 NW313_RS10865 WP_001082313.1 2403330..2404013(+) (ideA) [Vibrio cholerae strain N1252]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNESRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=719761 NW313_RS10865 WP_001082313.1 2403330..2404013(+) (ideA) [Vibrio cholerae strain N1252]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGAATGATTCCGAACGAATCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

100

100

1
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio parahaemolyticus RIMD 2210633

52.402

100

0.529
  dns Vibrio cholerae strain A1552

51.556

99.119

0.511
  dns Campylobacter jejuni RM1221

38.393

98.678

0.379