Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT288_RS11130 Genome accession   NZ_CP117960
Coordinates   2278042..2278578 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B-3008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2273042..2283578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT288_RS11110 soxR 2274770..2275234 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PT288_RS11115 soxS 2275320..2275643 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PT288_RS11120 pdeC 2275646..2277232 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PT288_RS11125 yjcB 2277662..2277943 (+) 282 WP_001295689.1 YjcB family protein -
  PT288_RS11130 ssb 2278042..2278578 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PT288_RS11135 uvrA 2278833..2281655 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PT288_RS11140 yjbR 2281690..2282046 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PT288_RS11145 yjbQ 2282050..2282466 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PT288_RS11150 aphA 2282577..2283290 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=719746 PT288_RS11130 WP_000168305.1 2278042..2278578(-) (ssb) [Escherichia coli strain B-3008]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=719746 PT288_RS11130 WP_000168305.1 2278042..2278578(-) (ssb) [Escherichia coli strain B-3008]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489