Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT284_RS21440 Genome accession   NZ_CP117959
Coordinates   4276919..4277455 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B-2207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4271919..4282455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT284_RS21420 aphA 4272208..4272921 (+) 714 WP_001226928.1 acid phosphatase AphA -
  PT284_RS21425 yjbQ 4273032..4273448 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PT284_RS21430 yjbR 4273452..4273808 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  PT284_RS21435 uvrA 4273843..4276665 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  PT284_RS21440 ssb 4276919..4277455 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PT284_RS21445 yjcB 4277554..4277835 (-) 282 WP_001295689.1 YjcB family protein -
  PT284_RS21450 pdeC 4278265..4279851 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  PT284_RS21455 soxS 4279854..4280177 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PT284_RS21460 soxR 4280263..4280727 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=719708 PT284_RS21440 WP_000168305.1 4276919..4277455(+) (ssb) [Escherichia coli strain B-2207]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=719708 PT284_RS21440 WP_000168305.1 4276919..4277455(+) (ssb) [Escherichia coli strain B-2207]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489