Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NVV93_RS17300 Genome accession   NZ_CP102830
Coordinates   3855770..3856270 (-) Length   166 a.a.
NCBI ID   WP_258251871.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3850770..3861270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS17275 (NVV93_17275) - 3850953..3851837 (-) 885 WP_258251867.1 NAD(P)-dependent oxidoreductase -
  NVV93_RS17280 (NVV93_17280) - 3852192..3852788 (+) 597 WP_258251868.1 paraquat-inducible protein A -
  NVV93_RS17285 (NVV93_17285) - 3852791..3853426 (+) 636 WP_258254406.1 paraquat-inducible protein A -
  NVV93_RS17290 (NVV93_17290) - 3853419..3855059 (+) 1641 WP_258251869.1 intermembrane transport protein PqiB -
  NVV93_RS17295 (NVV93_17295) - 3855089..3855661 (+) 573 WP_258251870.1 membrane integrity-associated transporter subunit PqiC -
  NVV93_RS17300 (NVV93_17300) ssb 3855770..3856270 (-) 501 WP_258251871.1 single-stranded DNA-binding protein Machinery gene
  NVV93_RS17305 (NVV93_17305) - 3856280..3857674 (-) 1395 WP_258251872.1 MFS transporter -
  NVV93_RS17310 (NVV93_17310) uvrA 3857807..3860641 (+) 2835 WP_258251873.1 excinuclease ABC subunit UvrA -
  NVV93_RS17315 (NVV93_17315) bfr 3860705..3861169 (-) 465 WP_258251874.1 bacterioferritin -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18511.55 Da        Isoelectric Point: 5.3335

>NTDB_id=719156 NVV93_RS17300 WP_258251871.1 3855770..3856270(-) (ssb) [Pseudomonas sp. LS44]
MARGVNKVILVGTCGQDPETRYMPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVALFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGVKRYTTEIVVDINGTMQLLGGRPDNAGGDSAPRQQRPQPQREQQAPRESRPAPQQQPAAQPAPDYDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=719156 NVV93_RS17300 WP_258251871.1 3855770..3856270(-) (ssb) [Pseudomonas sp. LS44]
ATGGCCCGTGGGGTTAACAAAGTCATCTTGGTCGGTACCTGCGGCCAGGATCCGGAAACGCGTTACATGCCTAATGGCAA
CGCCGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAAAGCGGACAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTGGCACTGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCCCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGATGGTGTGAAGCGCTACACCACGGAAATCGTCGTCGACATCAACGGCAC
CATGCAGTTGCTCGGTGGCCGTCCTGACAATGCCGGCGGTGATTCCGCGCCGCGTCAACAGCGTCCACAGCCGCAGCGTG
AGCAGCAGGCTCCTCGCGAGTCGCGCCCGGCGCCGCAGCAACAACCGGCCGCGCAGCCAGCGCCTGACTACGACAGCTTC
GACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.682

100

0.59
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.536
  ssb Neisseria meningitidis MC58

48.588

100

0.518
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.518