Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NVS55_RS05750 Genome accession   NZ_CP102770
Coordinates   1410484..1410987 (+) Length   167 a.a.
NCBI ID   WP_342378895.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain YRE12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1405484..1415987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVS55_RS05730 (NVS55_05740) - 1405965..1406426 (+) 462 WP_342378891.1 PTS sugar transporter subunit IIA -
  NVS55_RS05735 (NVS55_05745) - 1406450..1407295 (+) 846 WP_342378892.1 hypothetical protein -
  NVS55_RS05740 (NVS55_05750) dtd 1407292..1407759 (-) 468 WP_342378893.1 D-aminoacyl-tRNA deacylase -
  NVS55_RS05745 (NVS55_05755) dacB 1407984..1410260 (+) 2277 WP_342378894.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  NVS55_RS05750 (NVS55_05760) ssb 1410484..1410987 (+) 504 WP_342378895.1 single-stranded DNA-binding protein Machinery gene
  NVS55_RS05755 (NVS55_05765) - 1411109..1411783 (-) 675 WP_342378896.1 succinate dehydrogenase -
  NVS55_RS05760 (NVS55_05770) - 1412039..1412929 (+) 891 WP_342378897.1 Hsp33 family molecular chaperone HslO -
  NVS55_RS05765 (NVS55_05775) - 1412964..1413995 (+) 1032 WP_342378899.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  NVS55_RS05770 (NVS55_05780) - 1414061..1414867 (+) 807 WP_342378900.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17767.58 Da        Isoelectric Point: 5.3106

>NTDB_id=718961 NVS55_RS05750 WP_342378895.1 1410484..1410987(+) (ssb) [Myxococcus stipitatus strain YRE12]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDAGDGMGGGGGGGGRRQFGGQQQRGGMDGDYGQPPPMDDGMGGGGGGGN
GEDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=718961 NVS55_RS05750 WP_342378895.1 1410484..1410987(+) (ssb) [Myxococcus stipitatus strain YRE12]
ATGGCAGGTGGCGTGAACAAGGTCATCCTCATCGGCAACCTGGGTGCGGACCCGGAAGTGCGCTTCACCCCGGGTGGCCA
GGCCGTCGCGAACTTCCGCATCGCCACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGCCAGTGCTACGTCGAGGGG
CGCCTGCAGACGCGGGAGTGGACCGACAAGGAGAACCGGAAGAACTACACCACGGAGGTCGTCGCCAACGCGGTGACGTT
CCTGGGCGGTCGTGACGCCGGGGACGGCATGGGTGGTGGCGGCGGGGGTGGTGGGCGCCGGCAGTTCGGTGGCCAGCAGC
AACGCGGCGGCATGGACGGCGACTACGGCCAGCCGCCCCCCATGGATGACGGCATGGGCGGTGGTGGCGGTGGCGGCAAC
GGCGAGGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.283

100

0.521
  ssb Glaesserella parasuis strain SC1401

42.105

100

0.479
  ssb Neisseria meningitidis MC58

43.353

100

0.449
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.449