Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PTC91_RS03595 Genome accession   NZ_CP117749
Coordinates   744029..744526 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2022CK-00828     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 739029..749526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC91_RS03580 (PTC91_03580) bfr 739037..739501 (+) 465 WP_003093668.1 bacterioferritin -
  PTC91_RS03585 (PTC91_03585) uvrA 739573..742410 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PTC91_RS03590 (PTC91_03590) - 742624..744012 (+) 1389 WP_009316331.1 MFS transporter -
  PTC91_RS03595 (PTC91_03595) ssb 744029..744526 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PTC91_RS03600 (PTC91_03600) - 744668..745885 (+) 1218 WP_031633621.1 site-specific integrase -
  PTC91_RS03605 (PTC91_03605) - 745878..747392 (+) 1515 WP_023100336.1 site-specific integrase -
  PTC91_RS03610 (PTC91_03610) - 747385..749376 (+) 1992 WP_023100337.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=718909 PTC91_RS03595 WP_003114685.1 744029..744526(+) (ssb) [Pseudomonas aeruginosa strain 2022CK-00828]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=718909 PTC91_RS03595 WP_003114685.1 744029..744526(+) (ssb) [Pseudomonas aeruginosa strain 2022CK-00828]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515