Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSP57_RS03890 Genome accession   NZ_CP117527
Coordinates   833481..833978 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain MF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 828481..838978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSP57_RS03875 (PSP57_03875) bfr 828489..828953 (+) 465 WP_003093668.1 bacterioferritin -
  PSP57_RS03880 (PSP57_03880) uvrA 829025..831862 (-) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  PSP57_RS03885 (PSP57_03885) - 832076..833464 (+) 1389 WP_023095163.1 MFS transporter -
  PSP57_RS03890 (PSP57_03890) ssb 833481..833978 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PSP57_RS03895 (PSP57_03895) pchA 834065..835481 (-) 1417 Protein_767 isochorismate synthase PchA -
  PSP57_RS03900 (PSP57_03900) pchB 835478..835783 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  PSP57_RS03905 (PSP57_03905) pchC 835783..836538 (-) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  PSP57_RS03910 (PSP57_03910) pchD 836535..838178 (-) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=718331 PSP57_RS03890 WP_003114685.1 833481..833978(+) (ssb) [Pseudomonas aeruginosa strain MF1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=718331 PSP57_RS03890 WP_003114685.1 833481..833978(+) (ssb) [Pseudomonas aeruginosa strain MF1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515