Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NUH86_RS14350 Genome accession   NZ_CP102664
Coordinates   2931227..2931775 (+) Length   182 a.a.
NCBI ID   WP_267250120.1    Uniprot ID   -
Organism   Sphingobium sp. JS3065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2926227..2936775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH86_RS14325 (NUH86_14330) - 2926643..2926939 (+) 297 WP_267250116.1 SEL1-like repeat protein -
  NUH86_RS14330 (NUH86_14335) - 2927003..2928088 (-) 1086 WP_267250117.1 alkene reductase -
  NUH86_RS14335 (NUH86_14340) - 2928295..2928960 (+) 666 WP_267250118.1 COQ9 family protein -
  NUH86_RS14340 (NUH86_14345) - 2929048..2929323 (+) 276 WP_267252151.1 FeoA family protein -
  NUH86_RS14345 (NUH86_14350) feoB 2929320..2931176 (+) 1857 WP_267250119.1 ferrous iron transporter B -
  NUH86_RS14350 (NUH86_14355) ssb 2931227..2931775 (+) 549 WP_267250120.1 single-stranded DNA-binding protein Machinery gene
  NUH86_RS14355 (NUH86_14360) - 2931860..2932165 (-) 306 WP_267250121.1 hypothetical protein -
  NUH86_RS14360 (NUH86_14365) - 2932309..2932689 (+) 381 WP_267250122.1 RidA family protein -
  NUH86_RS14365 (NUH86_14370) - 2932695..2933051 (+) 357 WP_267250123.1 ArsC family reductase -
  NUH86_RS14370 (NUH86_14375) - 2933063..2934088 (+) 1026 WP_267252152.1 glycerophosphodiester phosphodiesterase -
  NUH86_RS14375 (NUH86_14380) - 2934128..2934553 (+) 426 WP_267250124.1 RrF2 family transcriptional regulator -
  NUH86_RS14380 (NUH86_14385) - 2934592..2935248 (+) 657 WP_267250125.1 MBL fold metallo-hydrolase -
  NUH86_RS14385 (NUH86_14390) - 2935251..2935682 (-) 432 WP_267250126.1 MAPEG family protein -
  NUH86_RS14390 (NUH86_14395) rpmF 2935890..2936069 (+) 180 WP_024021087.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18740.30 Da        Isoelectric Point: 5.0178

>NTDB_id=718317 NUH86_RS14350 WP_267250120.1 2931227..2931775(+) (ssb) [Sphingobium sp. JS3065]
MAGSVNKVILVGNLGADPEVRSFQNGGKVCNIRIATSESWKDRNSGERKERTEWHSVAIFSEGLAGVAERYLRKGSKVYI
EGKLQTRKWQDQSGNDRYTTEVVLQGPSAVLTMLDGAPGGGGGGRSQGGGDWSGGSSGFGGGDYDDFGGGGSGSGASRSS
GGGRGGAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=718317 NUH86_RS14350 WP_267250120.1 2931227..2931775(+) (ssb) [Sphingobium sp. JS3065]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTGGGCAATCTGGGCGCGGACCCGGAAGTCCGCAGCTTCCAGAATGGCGG
CAAGGTGTGCAACATCCGCATCGCGACGTCCGAAAGCTGGAAAGACCGCAACAGCGGGGAGCGTAAAGAGCGCACCGAAT
GGCACAGCGTCGCGATCTTCTCCGAAGGTCTGGCGGGCGTCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCAAGTTGCAGACCCGCAAGTGGCAGGACCAGTCGGGCAATGACCGCTATACCACCGAAGTCGTGTTGCAGGGCCC
CAGCGCCGTGCTGACCATGCTCGACGGAGCGCCGGGCGGCGGCGGTGGTGGCCGTTCGCAGGGTGGTGGCGACTGGAGCG
GTGGATCGAGCGGCTTCGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCTCCGGTTCTGGGGCCAGCCGTTCATCG
GGCGGCGGGCGCGGCGGCGCGGGCGGCCCTAATTTCGACAATGACCTGGATGACGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.505
  ssb Vibrio cholerae strain A1552

48.108

100

0.489
  ssb Neisseria gonorrhoeae MS11

38.71

100

0.396
  ssb Neisseria meningitidis MC58

38.172

100

0.39