Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NT239_RS04675 Genome accession   NZ_CP102611
Coordinates   1003338..1003850 (-) Length   170 a.a.
NCBI ID   WP_373976077.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 998338..1008850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS04650 (NT239_04660) - 998843..999169 (-) 327 WP_373976072.1 DUF2325 domain-containing protein -
  NT239_RS04655 (NT239_04665) - 999417..1000610 (+) 1194 WP_373976073.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -
  NT239_RS04660 (NT239_04670) - 1000598..1000969 (+) 372 WP_373976074.1 proton-translocating transhydrogenase family protein -
  NT239_RS04665 (NT239_04675) - 1000970..1002337 (+) 1368 WP_373976075.1 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta -
  NT239_RS04670 (NT239_04680) - 1002478..1003101 (-) 624 WP_373976076.1 class I SAM-dependent methyltransferase -
  NT239_RS04675 (NT239_04685) ssb 1003338..1003850 (-) 513 WP_373976077.1 single-stranded DNA-binding protein Machinery gene
  NT239_RS04680 (NT239_04690) - 1003851..1005215 (-) 1365 WP_373976681.1 MFS transporter -
  NT239_RS04685 (NT239_04695) uvrA 1005426..1008284 (+) 2859 WP_373976078.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18449.48 Da        Isoelectric Point: 5.3108

>NTDB_id=718142 NT239_RS04675 WP_373976077.1 1003338..1003850(-) (ssb) [Chitinibacter sp. SCUT-21]
MASLNKVLLIGNLGKDPESRFLPSGGAVCNFSIATTESWKDKNTGSKQEKTEWHNITMYGRLAEIAGEYLKKGSQVYIEG
RLQTRKWQDKQTGADRYTTEIIADEMKMLGGRGGMGGGMGGSQGGQGGYGGDDFNQEYSAPQQSAPRQAAPQPAARPAKS
FDDFEDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=718142 NT239_RS04675 WP_373976077.1 1003338..1003850(-) (ssb) [Chitinibacter sp. SCUT-21]
ATGGCATCGTTAAACAAAGTGCTGCTGATCGGCAATCTGGGTAAAGACCCAGAATCACGTTTCTTGCCAAGTGGTGGCGC
GGTGTGCAATTTCTCTATTGCTACCACCGAGAGCTGGAAAGACAAAAACACCGGTTCAAAGCAAGAAAAAACCGAATGGC
ACAACATCACGATGTACGGCCGCTTGGCTGAAATCGCTGGCGAATACCTGAAAAAAGGCAGCCAAGTGTATATCGAAGGC
CGTCTGCAAACGCGTAAATGGCAAGACAAACAAACTGGCGCCGATCGCTACACCACTGAAATTATCGCTGATGAGATGAA
AATGCTCGGCGGCCGTGGTGGTATGGGCGGTGGCATGGGTGGTTCGCAAGGTGGCCAAGGTGGCTACGGTGGTGACGACT
TCAACCAAGAATACAGCGCCCCACAACAATCAGCCCCACGCCAAGCAGCGCCACAGCCAGCCGCGCGCCCAGCGAAAAGC
TTTGATGATTTTGAAGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.522

100

0.612
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.541
  ssb Neisseria meningitidis MC58

52.571

100

0.541
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.541