Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   KQ693_RS06800 Genome accession   NZ_CP102606
Coordinates   1205625..1206095 (-) Length   156 a.a.
NCBI ID   WP_267260696.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200625..1211095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS06775 - 1201591..1201947 (-) 357 WP_219759876.1 type II secretion system protein -
  KQ693_RS06780 (KQ693_06780) comZ 1202166..1203836 (-) 1671 WP_219759877.1 competence protein ComZ Machinery gene
  KQ693_RS06785 (KQ693_06785) pilA/pilA3 1203846..1204577 (-) 732 WP_267260694.1 PilW family protein Machinery gene
  KQ693_RS06790 (KQ693_06790) pilA/pilA2 1204547..1205110 (-) 564 WP_219759879.1 type II secretion system protein Machinery gene
  KQ693_RS06795 (KQ693_06795) - 1205107..1205571 (-) 465 WP_267260695.1 GspH/FimT family protein -
  KQ693_RS06800 (KQ693_06800) pilA/pilA1 1205625..1206095 (-) 471 WP_267260696.1 GspH/FimT family protein Machinery gene
  KQ693_RS06805 (KQ693_06805) - 1206166..1207356 (+) 1191 WP_219759882.1 thiolase family protein -
  KQ693_RS06810 (KQ693_06810) - 1207457..1207765 (-) 309 WP_019551627.1 DUF503 domain-containing protein -
  KQ693_RS06815 (KQ693_06815) - 1208199..1208471 (+) 273 WP_246584361.1 DUF5647 family protein -
  KQ693_RS06820 (KQ693_06820) - 1208570..1211035 (-) 2466 WP_267260698.1 BamA/OMP85 family outer membrane protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16806.47 Da        Isoelectric Point: 11.2852

>NTDB_id=718120 KQ693_RS06800 WP_267260696.1 1205625..1206095(-) (pilA/pilA1) [Thermus sp. PS18]
MRREAFTLLELLIVLGILGVLLGLGLPLLSPNRLALDTAARSLAAQVTRARLEAIRQNTFAGLMIFTEGTGGYAIFTDKN
GNRAYDPGEEVQLVRFGQGNWARVQLDRGQSTLGNMPILFDSRGLPAKPITGTITLTSGAATRKVVVSQQGRARVE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=718120 KQ693_RS06800 WP_267260696.1 1205625..1206095(-) (pilA/pilA1) [Thermus sp. PS18]
ATGCGCAGGGAGGCTTTTACCCTTCTTGAGCTTTTGATCGTCCTGGGAATTCTGGGAGTGCTCTTGGGCCTGGGCCTTCC
TCTCCTTTCCCCGAACCGCTTGGCCCTGGATACCGCCGCCCGCTCCCTGGCCGCCCAAGTAACCCGGGCCAGGCTGGAGG
CCATACGCCAGAATACCTTTGCTGGTCTTATGATCTTCACCGAAGGCACAGGAGGATACGCCATCTTCACGGACAAAAAC
GGGAACCGGGCTTATGACCCCGGCGAAGAAGTCCAGCTGGTCCGCTTCGGACAAGGCAACTGGGCCCGGGTGCAGCTGGA
CCGTGGCCAGAGCACCCTGGGCAACATGCCTATCCTCTTTGATTCCCGGGGGCTCCCCGCCAAGCCCATCACCGGCACCA
TCACCCTTACCTCCGGCGCAGCCACCCGCAAGGTAGTCGTCAGCCAGCAAGGCCGAGCCCGGGTGGAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II transport protein GspH (GspH)

(39-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

74.016

81.41

0.603