Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   KQ693_RS06780 Genome accession   NZ_CP102606
Coordinates   1202166..1203836 (-) Length   556 a.a.
NCBI ID   WP_219759877.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197166..1208836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS06760 (KQ693_06760) - 1197219..1198076 (-) 858 WP_267260691.1 sugar transferase -
  KQ693_RS06765 (KQ693_06765) - 1198875..1199930 (+) 1056 WP_267260692.1 O-antigen ligase family protein -
  KQ693_RS06770 (KQ693_06770) - 1199811..1201289 (-) 1479 WP_267260693.1 O-antigen ligase family protein -
  KQ693_RS06775 - 1201591..1201947 (-) 357 WP_219759876.1 type II secretion system protein -
  KQ693_RS06780 (KQ693_06780) comZ 1202166..1203836 (-) 1671 WP_219759877.1 competence protein ComZ Machinery gene
  KQ693_RS06785 (KQ693_06785) pilA/pilA3 1203846..1204577 (-) 732 WP_267260694.1 PilW family protein Machinery gene
  KQ693_RS06790 (KQ693_06790) pilA/pilA2 1204547..1205110 (-) 564 WP_219759879.1 type II secretion system protein Machinery gene
  KQ693_RS06795 (KQ693_06795) - 1205107..1205571 (-) 465 WP_267260695.1 GspH/FimT family protein -
  KQ693_RS06800 (KQ693_06800) pilA/pilA1 1205625..1206095 (-) 471 WP_267260696.1 GspH/FimT family protein Machinery gene
  KQ693_RS06805 (KQ693_06805) - 1206166..1207356 (+) 1191 WP_219759882.1 thiolase family protein -
  KQ693_RS06810 (KQ693_06810) - 1207457..1207765 (-) 309 WP_019551627.1 DUF503 domain-containing protein -
  KQ693_RS06815 (KQ693_06815) - 1208199..1208471 (+) 273 WP_246584361.1 DUF5647 family protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 60040.55 Da        Isoelectric Point: 8.2783

>NTDB_id=718117 KQ693_RS06780 WP_219759877.1 1202166..1203836(-) (comZ) [Thermus sp. PS18]
MRAKGVALVATLALMLIIALLVFGTFFRSQIELWVTRNDTTSVQAFYAAEAGLQKYKAVLFQQYVWREQQINRGGGPGCY
TSLVTGIDLYRNGNLLTFQNNQIILAQNENVVDANGNPVGQYTVTLIRDAQDGQLFTLVSNGTSSGAKATVQATFRLSNT
GYLEQAIFAGSGQANKWLNGGATIRGGIYIVGDPSNPDQYVIESNGNFSLFNSYNLNNYPGIASRVESAYQQVGDLCASV
RVQYGKISVGGSTQIGEPSNKVKGVFVGRGSQDITGQNVNVCQNNKGVCTEAMGPFDLSNPPPFPTLDTKLDSDTCSSYP
TWRACLQDKATLRIQRLGNQVYVLQPPNTTLDSSCSAALRSGILNLNTSNVDCTFTRLDGTRGGFRYTYSGGQGVLELYG
DVTLEGVDVIFNQPTAYRAISGDAKKATLVVLSESGQGGNIDINGNLLPDSSHGLFPNHVLGLIAEKDVYQRGNKTYVMA
PVYAGGTFRIEKDGVLFGSVISNQFCTTSAGNRNNCNAGQTAEVVYIRIPYQNRPVLLPSLKGGKPTFQVLSYERR

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=718117 KQ693_RS06780 WP_219759877.1 1202166..1203836(-) (comZ) [Thermus sp. PS18]
ATGCGTGCGAAAGGCGTTGCTTTAGTAGCCACCCTTGCCCTCATGCTGATCATAGCTCTCTTGGTTTTTGGCACCTTCTT
CCGAAGCCAGATTGAGCTTTGGGTTACCCGCAACGATACTACCTCGGTTCAAGCGTTTTACGCCGCCGAAGCAGGTTTGC
AAAAGTATAAGGCGGTGCTCTTCCAACAGTACGTTTGGCGCGAGCAACAAATCAACAGGGGGGGTGGACCAGGGTGCTAT
ACCTCTTTAGTAACAGGTATAGATCTGTACCGAAACGGTAACCTTCTCACCTTTCAGAACAATCAAATTATCCTAGCGCA
AAACGAAAACGTGGTAGATGCAAATGGGAACCCCGTGGGCCAGTACACGGTCACCCTTATCAGAGATGCCCAGGATGGTC
AGCTTTTCACCCTCGTGTCGAACGGTACTTCCAGCGGCGCCAAAGCTACGGTCCAGGCTACATTCCGCCTGAGCAACACT
GGCTACCTTGAGCAAGCTATCTTCGCAGGAAGTGGTCAAGCCAACAAATGGCTCAACGGTGGAGCCACCATTCGGGGTGG
CATTTACATCGTGGGTGACCCTTCTAATCCTGATCAGTATGTAATAGAGAGCAACGGCAATTTCAGTTTGTTTAACTCCT
ACAATCTCAACAACTACCCCGGCATCGCCAGCAGGGTAGAAAGCGCCTACCAGCAGGTTGGCGACCTCTGCGCTAGTGTG
CGGGTTCAATACGGAAAGATCTCCGTGGGGGGAAGTACACAAATTGGGGAGCCAAGTAACAAAGTGAAAGGAGTCTTCGT
AGGAAGGGGAAGCCAAGACATCACTGGCCAAAACGTCAATGTATGCCAAAACAACAAGGGGGTCTGCACAGAAGCTATGG
GTCCCTTTGATCTATCCAATCCCCCCCCTTTTCCTACCCTGGATACCAAGCTGGATTCGGACACCTGCAGCAGCTACCCA
ACGTGGCGAGCCTGCCTGCAGGATAAGGCCACATTGCGCATCCAACGTTTAGGCAATCAGGTTTACGTACTCCAGCCCCC
CAACACCACCCTCGATTCCTCCTGTTCCGCTGCCCTGAGGTCTGGTATCCTCAACCTGAACACCAGCAACGTGGACTGCA
CCTTCACCCGTTTAGACGGAACTCGGGGAGGGTTCAGGTACACATATTCGGGAGGCCAAGGGGTCCTGGAGCTTTATGGT
GACGTAACGCTAGAGGGGGTGGATGTCATTTTTAACCAGCCCACAGCCTATAGGGCCATTTCTGGAGATGCCAAGAAAGC
TACCCTTGTCGTTCTGAGTGAGAGCGGGCAGGGTGGGAACATTGACATCAATGGTAACCTGCTTCCTGATTCTTCCCACG
GGCTCTTCCCCAATCACGTCCTGGGGCTGATTGCAGAAAAGGACGTGTACCAGAGAGGGAATAAGACGTACGTGATGGCT
CCAGTATATGCGGGGGGCACCTTTCGGATAGAAAAGGACGGCGTCCTCTTTGGCTCGGTAATTAGCAATCAGTTCTGCAC
CACGAGCGCCGGCAACCGCAATAACTGCAATGCAGGGCAAACGGCTGAAGTAGTTTACATCCGCATCCCCTACCAAAACC
GCCCTGTTCTCCTGCCCAGTTTAAAGGGGGGAAAGCCAACCTTCCAGGTTCTCTCCTATGAGAGGCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

74.46

100

0.745