Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH70_RS16360 Genome accession   NZ_CP117438
Coordinates   3683877..3684512 (-) Length   211 a.a.
NCBI ID   WP_053256799.1    Uniprot ID   A0ABY1TJQ9
Organism   Pseudomonas fluorescens strain FP2327     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678877..3689512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS16325 (PSH70_16320) - 3679258..3679929 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  PSH70_RS16330 (PSH70_16325) murB 3679992..3681011 (-) 1020 WP_053256794.1 UDP-N-acetylmuramate dehydrogenase -
  PSH70_RS16335 (PSH70_16330) - 3681008..3681472 (-) 465 WP_053256795.1 low molecular weight protein-tyrosine-phosphatase -
  PSH70_RS16340 (PSH70_16335) kdsB 3681472..3682236 (-) 765 WP_078826784.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH70_RS16345 (PSH70_16340) - 3682233..3682418 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH70_RS16350 (PSH70_16345) lpxK 3682442..3683452 (-) 1011 WP_305437932.1 tetraacyldisaccharide 4'-kinase -
  PSH70_RS16355 (PSH70_16350) - 3683452..3683880 (-) 429 WP_053256798.1 biopolymer transporter ExbD -
  PSH70_RS16360 (PSH70_16355) exbB 3683877..3684512 (-) 636 WP_053256799.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH70_RS16365 (PSH70_16360) comA 3684622..3686847 (-) 2226 WP_078826786.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH70_RS16370 (PSH70_16365) - 3686983..3687504 (+) 522 WP_069552728.1 DUF2062 domain-containing protein -
  PSH70_RS16375 (PSH70_16370) - 3687501..3688859 (-) 1359 WP_305793544.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8771

>NTDB_id=718118 PSH70_RS16360 WP_053256799.1 3683877..3684512(-) (exbB) [Pseudomonas fluorescens strain FP2327]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=718118 PSH70_RS16360 WP_053256799.1 3683877..3684512(-) (exbB) [Pseudomonas fluorescens strain FP2327]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATATTGAGCTCCATCGCCGCCCTTGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGGATAACGCCTGAGCATCTGTTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGATAAAGAAAAGCTCAAGGAATTACGCGCCAACTCGCCTTTAGGTGAAATCCTCGCGGCCGGCCTTGCCAAC
TCCAAGCATGGTCGAGAGATCATGAAAGAGTGCATCGAGGAGGCCGCTGCCCGGGTCATCCATGAAATGGAGCGCTATAT
CAACGCGCTTGGCACCATTGCGGCCATGGCACCGTTGCTCGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACTAACGCCGCCGTGCTGGCGGGCGGTATCTCCAAGGCGTTGATTACCACGGCT
GCGGGCCTGATGGTCGGCATCCCTTCGGTATTTTTCCACCGTTTCCTGCAACGTCGCATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTTGAGGGCCGAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844