Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH70_RS16365 Genome accession   NZ_CP117438
Coordinates   3684622..3686847 (-) Length   741 a.a.
NCBI ID   WP_078826786.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FP2327     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3679622..3691847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS16330 (PSH70_16325) murB 3679992..3681011 (-) 1020 WP_053256794.1 UDP-N-acetylmuramate dehydrogenase -
  PSH70_RS16335 (PSH70_16330) - 3681008..3681472 (-) 465 WP_053256795.1 low molecular weight protein-tyrosine-phosphatase -
  PSH70_RS16340 (PSH70_16335) kdsB 3681472..3682236 (-) 765 WP_078826784.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH70_RS16345 (PSH70_16340) - 3682233..3682418 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH70_RS16350 (PSH70_16345) lpxK 3682442..3683452 (-) 1011 WP_305437932.1 tetraacyldisaccharide 4'-kinase -
  PSH70_RS16355 (PSH70_16350) - 3683452..3683880 (-) 429 WP_053256798.1 biopolymer transporter ExbD -
  PSH70_RS16360 (PSH70_16355) exbB 3683877..3684512 (-) 636 WP_053256799.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH70_RS16365 (PSH70_16360) comA 3684622..3686847 (-) 2226 WP_078826786.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH70_RS16370 (PSH70_16365) - 3686983..3687504 (+) 522 WP_069552728.1 DUF2062 domain-containing protein -
  PSH70_RS16375 (PSH70_16370) - 3687501..3688859 (-) 1359 WP_305793544.1 sensor histidine kinase -
  PSH70_RS16380 (PSH70_16375) - 3688846..3689574 (-) 729 WP_069552727.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79973.82 Da        Isoelectric Point: 10.9627

>NTDB_id=718119 PSH70_RS16365 WP_078826786.1 3684622..3686847(-) (comA) [Pseudomonas fluorescens strain FP2327]
MRTGMFALGLGLLTLRFLPALPPTAWLLAMFVLALMLLPFRTYPLAFFLLGLGWACISAQWALNDRLQPALDGQTRWVEG
RVVGLPQQTSTGVRFELADGRSRTARLPQRIRVSWQGGPPVNSGERWRLAITLKRPAGLLNFHGFDYEAWLLAQRMGATG
SVKDGQRLAPARNAWRDSVRQRLKAVDAQGREAGLAALVLGDGSGLATADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALDGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRIWQAWTRPQGLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTLLMAVPWVGEGLLWLAGGALDGLFRGLTLLAGLRSAWVPAEVPVGYWLLSAVGAVLLLLPKGVPFRLLGWPMLMVAI
FPPRALVPHGQVEVLQLDVGQGQAVILRTRHHTMLYDAGPRSGAADLGARVVLPALQKLGVGALDLMVISHAHADHAGGA
TAVARALAVGRVVGGESAGLPAFLDTQPCISGEQWEWDGVSFELWQWSGATSPNPKSCVLRVQAQGERLLLTGDIDQAAE
RAFLTSPLAVPTDWLQAPHHGSRSSSSWPLLQRLAPSSVLISRGRGNAFGHPHPQVMERYQALGSQVYDSAERGAVRLQL
GTFQAPVVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=718119 PSH70_RS16365 WP_078826786.1 3684622..3686847(-) (comA) [Pseudomonas fluorescens strain FP2327]
ATGAGAACAGGCATGTTCGCGCTCGGACTTGGATTGCTTACGCTGCGATTTCTACCGGCACTGCCGCCCACCGCATGGCT
GCTGGCCATGTTCGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTACCCGCTGGCGTTCTTCCTGCTGGGGTTGGGTT
GGGCCTGCATCAGCGCGCAATGGGCGTTGAATGATCGGCTCCAGCCGGCACTGGACGGGCAGACGCGGTGGGTAGAGGGC
CGTGTGGTTGGGCTGCCACAGCAAACGAGCACCGGCGTGCGCTTCGAATTGGCCGACGGCCGGTCGCGTACGGCTCGGTT
GCCCCAGCGTATCCGAGTGTCCTGGCAGGGTGGCCCGCCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGATCACCTTGA
AACGGCCCGCGGGGCTGCTTAATTTTCATGGCTTTGACTATGAGGCCTGGTTGCTCGCCCAGCGTATGGGGGCCACCGGT
TCGGTGAAGGATGGCCAACGCCTGGCGCCGGCCCGCAATGCCTGGCGTGACAGCGTCCGGCAGCGCTTGAAAGCAGTTGA
TGCTCAAGGTCGCGAGGCGGGCTTGGCGGCGTTGGTGCTGGGCGATGGCTCGGGGCTGGCTACCGCGGATTGGCAGGTGT
TGCAAGACACCGGAACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTCGCGGGGTTGATCTACGGCCTG
GTAGCCGGGCTGGCACGCTACGGTTGCTGGCCCCGAGCCTTGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTACCGC
TGCGCTCGGTTACGGCCTGTTGGCGGGGTTCGGTGTACCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGTCTGCGTTTTCGGCATTTAGGCGTGTGGTGGCCGTTATTACTCGCCCTCGATGGCGTGCTGGTGCTGGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCGGTGCTGGTTCTGGCGTTCAGCGGGCGCTTGGGCCC
GTGGCGCATCTGGCAGGCCTGGACGCGTCCCCAAGGGTTGATCGCCATCGGTTTGTTTCCGGTATTGCTGGTGCTGGGCT
TGCCCATCAGCCTCAGCGCGCCGGTTGCCAACCTGTTTGCCGTGCCGTGGATCAGCTTGGTGGTGTTGCCTCTGGCACTG
CTGGGGACCTTGCTTATGGCGGTGCCGTGGGTGGGCGAGGGCTTGTTGTGGTTGGCCGGTGGAGCGCTTGATGGTCTGTT
CAGGGGCTTGACGCTGTTGGCGGGGCTGCGCTCGGCCTGGGTGCCTGCCGAGGTGCCCGTGGGTTATTGGTTATTAAGCG
CTGTGGGCGCGGTGTTATTGCTGTTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGTTGATGGTGGCAATC
TTTCCGCCGCGGGCACTGGTGCCGCATGGGCAGGTGGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAAGCGGTGATCCT
GCGCACGCGCCATCACACAATGCTCTACGACGCAGGGCCGCGCTCCGGGGCGGCCGACCTCGGTGCGCGCGTGGTGTTGC
CGGCGCTGCAAAAACTGGGGGTAGGGGCGCTGGACCTCATGGTGATCAGCCACGCCCACGCTGACCATGCCGGCGGCGCC
ACTGCGGTTGCCCGTGCGCTTGCGGTCGGGCGGGTTGTCGGCGGAGAGTCCGCAGGGCTGCCGGCGTTTCTCGATACGCA
GCCTTGCATCAGTGGTGAGCAATGGGAGTGGGATGGCGTGTCGTTTGAGCTGTGGCAATGGTCAGGCGCCACGAGCCCTA
ATCCGAAATCCTGCGTGTTGCGCGTACAAGCCCAGGGCGAACGCCTGCTGCTGACGGGGGATATCGATCAAGCCGCTGAA
AGGGCGTTCCTCACATCCCCGCTGGCGGTGCCGACGGATTGGCTGCAAGCGCCCCACCATGGCAGCCGCAGCTCCTCATC
CTGGCCTTTGCTGCAACGCCTTGCGCCCAGCTCGGTACTGATCTCACGCGGGCGTGGCAATGCATTTGGTCATCCCCACC
CACAGGTAATGGAGCGTTATCAAGCGTTGGGCAGCCAAGTCTACGACAGCGCGGAACGGGGGGCCGTGCGTCTGCAACTG
GGTACCTTCCAAGCACCGGTTGTTGCGCGTAGTCAACGTAGATTCTGGCGCGAGGCGTTACCGTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.031

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.717

100

0.372