Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA2   Type   Machinery gene
Locus tag   KQ693_RS06790 Genome accession   NZ_CP102606
Coordinates   1204547..1205110 (-) Length   187 a.a.
NCBI ID   WP_219759879.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199547..1210110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS06770 (KQ693_06770) - 1199811..1201289 (-) 1479 WP_267260693.1 O-antigen ligase family protein -
  KQ693_RS06775 - 1201591..1201947 (-) 357 WP_219759876.1 type II secretion system protein -
  KQ693_RS06780 (KQ693_06780) comZ 1202166..1203836 (-) 1671 WP_219759877.1 competence protein ComZ Machinery gene
  KQ693_RS06785 (KQ693_06785) pilA/pilA3 1203846..1204577 (-) 732 WP_267260694.1 PilW family protein Machinery gene
  KQ693_RS06790 (KQ693_06790) pilA/pilA2 1204547..1205110 (-) 564 WP_219759879.1 type II secretion system protein Machinery gene
  KQ693_RS06795 (KQ693_06795) - 1205107..1205571 (-) 465 WP_267260695.1 GspH/FimT family protein -
  KQ693_RS06800 (KQ693_06800) pilA/pilA1 1205625..1206095 (-) 471 WP_267260696.1 GspH/FimT family protein Machinery gene
  KQ693_RS06805 (KQ693_06805) - 1206166..1207356 (+) 1191 WP_219759882.1 thiolase family protein -
  KQ693_RS06810 (KQ693_06810) - 1207457..1207765 (-) 309 WP_019551627.1 DUF503 domain-containing protein -
  KQ693_RS06815 (KQ693_06815) - 1208199..1208471 (+) 273 WP_246584361.1 DUF5647 family protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20258.17 Da        Isoelectric Point: 8.7942

>NTDB_id=718119 KQ693_RS06790 WP_219759879.1 1204547..1205110(-) (pilA/pilA2) [Thermus sp. PS18]
MKKRQGLTLLETLIALAVLGIAFGALLMSQLSNLRVSAQNRYATDAKAAAVRVLEQKSSEVLKSDILMPPSVYIDDPSTN
RSFYFVDYYFGCPSRVNPPPPLRSGSQDNLRQVTCSGQERQGNSTIDWLIFGEGGTLGEGVLTIVVTATHDRGPKVTMGR
RVTCYDVYPSPTQDKPAPCPPPGGGRP

Nucleotide


Download         Length: 564 bp        

>NTDB_id=718119 KQ693_RS06790 WP_219759879.1 1204547..1205110(-) (pilA/pilA2) [Thermus sp. PS18]
GTGAAAAAAAGGCAAGGCCTAACTCTACTAGAAACTCTTATCGCCCTGGCTGTTCTGGGCATCGCCTTCGGGGCTTTGCT
CATGAGCCAGCTATCCAACCTACGGGTTTCGGCGCAAAACCGCTACGCCACAGACGCTAAGGCCGCGGCAGTAAGGGTGC
TGGAGCAAAAGTCCTCTGAGGTGTTAAAGAGTGATATACTGATGCCCCCGAGTGTTTACATAGACGATCCCAGTACCAAT
CGTAGCTTCTACTTCGTGGACTATTACTTTGGCTGCCCAAGCCGTGTGAACCCCCCACCCCCCTTAAGAAGCGGAAGTCA
GGATAACTTACGCCAGGTGACGTGCTCTGGTCAAGAACGGCAGGGCAACTCTACTATCGACTGGCTTATATTCGGCGAGG
GCGGGACCCTAGGTGAAGGAGTGCTAACGATTGTGGTGACTGCCACCCACGACCGGGGCCCAAAAGTAACCATGGGCCGG
AGGGTAACATGTTATGACGTCTATCCTTCCCCTACTCAGGACAAACCCGCCCCATGTCCTCCCCCGGGAGGTGGTCGTCC
GTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA2 Thermus thermophilus HB27

65.591

99.465

0.652