Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   IL310_RS12805 Genome accession   NZ_CP117409
Coordinates   2129032..2130474 (+) Length   480 a.a.
NCBI ID   WP_201248531.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2124032..2135474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS12770 (IL310_12775) - 2124236..2124427 (+) 192 WP_003131566.1 hypothetical protein -
  IL310_RS12775 (IL310_12780) rsmI 2124504..2125379 (-) 876 WP_058204088.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IL310_RS12780 (IL310_12785) yabA 2125379..2125705 (-) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  IL310_RS12785 (IL310_12790) yaaT 2125698..2126480 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  IL310_RS12790 (IL310_12795) - 2126532..2127392 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  IL310_RS12795 (IL310_12800) tmk 2127525..2128160 (-) 636 WP_012897230.1 dTMP kinase -
  IL310_RS12800 (IL310_12805) yycF 2128338..2129039 (+) 702 WP_003131580.1 response regulator YycF -
  IL310_RS12805 (IL310_12810) vicK 2129032..2130474 (+) 1443 WP_201248531.1 cell wall metabolism sensor histidine kinase WalK Regulator
  IL310_RS12810 (IL310_12815) vicX 2130646..2131458 (+) 813 WP_201248530.1 MBL fold metallo-hydrolase Regulator
  IL310_RS12815 (IL310_12820) groL 2131504..2133132 (-) 1629 WP_003131585.1 chaperonin GroEL -
  IL310_RS12820 (IL310_12825) groES 2133221..2133505 (-) 285 WP_003131589.1 co-chaperone GroES -
  IL310_RS12825 (IL310_12830) - 2133625..2134014 (-) 390 WP_201248529.1 single-stranded DNA-binding protein -
  IL310_RS12830 (IL310_12835) - 2134104..2135444 (-) 1341 WP_023188995.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54771.24 Da        Isoelectric Point: 4.5889

>NTDB_id=718057 IL310_RS12805 WP_201248531.1 2129032..2130474(+) (vicK) [Lactococcus lactis strain LB7]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVYKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKITDQYNFYDLLEKEPEITIETHDSGNESISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=718057 IL310_RS12805 WP_201248531.1 2129032..2130474(+) (vicK) [Lactococcus lactis strain LB7]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTATAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGCGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATATGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACGCAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATTCTCGCATATATGGTTGATGGCGTCATTGCCACCGATCGTCGTGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCACTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTTTTAAAAATTACTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACATGATTC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTGCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TCTTACATGATATGACTGAACAAGACAAGGCCGAACGAGAGCGCCGTCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGATGTTCTAATCTCCATCAGTGACCAAGGAATGGGGATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGGGGGACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGTTCTGAAGGAGAAGGAAAAGGAACGACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

PAS domain (PAS_9)

(124-220)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.559

86.875

0.448
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442