Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IL310_RS12810 Genome accession   NZ_CP117409
Coordinates   2130646..2131458 (+) Length   270 a.a.
NCBI ID   WP_201248530.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125646..2136458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS12785 (IL310_12790) yaaT 2125698..2126480 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  IL310_RS12790 (IL310_12795) - 2126532..2127392 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  IL310_RS12795 (IL310_12800) tmk 2127525..2128160 (-) 636 WP_012897230.1 dTMP kinase -
  IL310_RS12800 (IL310_12805) yycF 2128338..2129039 (+) 702 WP_003131580.1 response regulator YycF -
  IL310_RS12805 (IL310_12810) vicK 2129032..2130474 (+) 1443 WP_201248531.1 cell wall metabolism sensor histidine kinase WalK Regulator
  IL310_RS12810 (IL310_12815) vicX 2130646..2131458 (+) 813 WP_201248530.1 MBL fold metallo-hydrolase Regulator
  IL310_RS12815 (IL310_12820) groL 2131504..2133132 (-) 1629 WP_003131585.1 chaperonin GroEL -
  IL310_RS12820 (IL310_12825) groES 2133221..2133505 (-) 285 WP_003131589.1 co-chaperone GroES -
  IL310_RS12825 (IL310_12830) - 2133625..2134014 (-) 390 WP_201248529.1 single-stranded DNA-binding protein -
  IL310_RS12830 (IL310_12835) - 2134104..2135444 (-) 1341 WP_023188995.1 FAD-dependent oxidoreductase -
  IL310_RS12835 (IL310_12840) ytpR 2135607..2136233 (-) 627 WP_015425841.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30536.40 Da        Isoelectric Point: 5.8504

>NTDB_id=718058 IL310_RS12810 WP_201248530.1 2130646..2131458(+) (vicX) [Lactococcus lactis strain LB7]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKELKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=718058 IL310_RS12810 WP_201248530.1 2130646..2131458(+) (vicX) [Lactococcus lactis strain LB7]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAGGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGAACTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.148

100

0.681