Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IL310_RS12165 Genome accession   NZ_CP117409
Coordinates   2016484..2017125 (+) Length   213 a.a.
NCBI ID   WP_003131746.1    Uniprot ID   Q9CI22
Organism   Lactococcus lactis strain LB7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011484..2022125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS12135 (IL310_12140) - 2012650..2012841 (-) 192 WP_003131739.1 DNA-directed RNA polymerase subunit beta -
  IL310_RS12140 (IL310_12145) murA 2012841..2014121 (-) 1281 WP_032947049.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IL310_RS12145 (IL310_12150) - 2014215..2014994 (-) 780 WP_017864167.1 inositol monophosphatase family protein -
  IL310_RS12150 (IL310_12155) - 2014960..2015241 (-) 282 WP_003131743.1 UPF0223 family protein -
  IL310_RS12155 (IL310_12160) spx 2015333..2015719 (-) 387 WP_010905435.1 transcriptional regulator Spx -
  IL310_RS12160 (IL310_12165) - 2015879..2016403 (-) 525 WP_195228953.1 DUF1273 domain-containing protein -
  IL310_RS12165 (IL310_12170) recU 2016484..2017125 (+) 642 WP_003131746.1 Holliday junction resolvase RecU Machinery gene
  IL310_RS12170 (IL310_12175) - 2017193..2019187 (+) 1995 WP_201248596.1 transglycosylase domain-containing protein -
  IL310_RS12175 (IL310_12180) - 2019188..2019820 (+) 633 WP_033900522.1 MBL fold metallo-hydrolase -
  IL310_RS12180 (IL310_12185) - 2019859..2020944 (-) 1086 WP_058206268.1 LysM peptidoglycan-binding domain-containing protein -
  IL310_RS12185 (IL310_12190) cysK 2021162..2022094 (+) 933 WP_058203350.1 cysteine synthase A -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24369.13 Da        Isoelectric Point: 10.1344

>NTDB_id=718052 IL310_RS12165 WP_003131746.1 2016484..2017125(+) (recU) [Lactococcus lactis strain LB7]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=718052 IL310_RS12165 WP_003131746.1 2016484..2017125(+) (recU) [Lactococcus lactis strain LB7]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACTTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATCCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGTTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CI22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469